{"id":559,"date":"2025-12-17T18:18:59","date_gmt":"2025-12-17T18:18:59","guid":{"rendered":"https:\/\/depts.washington.edu\/nesacbio\/wordpress\/?page_id=559"},"modified":"2025-12-17T23:22:12","modified_gmt":"2025-12-17T23:22:12","slug":"nbtoolbox-spectragui-information","status":"publish","type":"page","link":"https:\/\/depts.washington.edu\/nesacbio\/nbtoolbox-spectragui-information\/","title":{"rendered":"NBToolbox Spectragui Information"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><strong>Spectragui Features<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Import from workspace<\/li>\n\n\n\n<li>Normalize data<\/li>\n\n\n\n<li>Delete samples (spectra)<\/li>\n\n\n\n<li>Delete Variables (peaks)<\/li>\n\n\n\n<li>Reorganize data matrix<\/li>\n\n\n\n<li>Run PCA<\/li>\n\n\n\n<li>Project data into PCA model<\/li>\n\n\n\n<li>Run DPCA (Descriminant PCA)<\/li>\n\n\n\n<li>Export MVA data to ASCII text<\/li>\n\n\n\n<li>Plot peak area data<\/li>\n\n\n\n<li>Create and plot ratios of peaks (A\/B and A\/(A+B))<\/li>\n\n\n\n<li>Plot Scores with 95% confidence limit<\/li>\n\n\n\n<li>Plot and label Loadings<\/li>\n\n\n\n<li>Create external Matlab plots<\/li>\n\n\n\n<li>Peak ratio maker<\/li>\n\n\n\n<li>Find correlated peaks function<\/li>\n\n\n\n<li>PC Data Browser &#8211; to look at relative intensity trends for PCs beyond PC1.<\/li>\n<\/ul>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"937\" src=\"https:\/\/depts.washington.edu\/nesacbio\/wordpress\/wp-content\/uploads\/2025\/12\/SpectraGuiScreen01-1024x937.jpg\" alt=\"\" class=\"wp-image-560\" srcset=\"https:\/\/depts.washington.edu\/nesacbio\/wordpress\/wp-content\/uploads\/2025\/12\/SpectraGuiScreen01-1024x937.jpg 1024w, https:\/\/depts.washington.edu\/nesacbio\/wordpress\/wp-content\/uploads\/2025\/12\/SpectraGuiScreen01-300x274.jpg 300w, https:\/\/depts.washington.edu\/nesacbio\/wordpress\/wp-content\/uploads\/2025\/12\/SpectraGuiScreen01-768x703.jpg 768w, https:\/\/depts.washington.edu\/nesacbio\/wordpress\/wp-content\/uploads\/2025\/12\/SpectraGuiScreen01.jpg 1034w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-element-caption\">Example screenshot from the Spectragui showing the PCA tools interface.<\/figcaption><\/figure>\n\n\n\n<p class=\"wp-block-paragraph\"><a href=\"https:\/\/depts.washington.edu\/nesacbio\/wordpress\/spectragui-tutorial-page\/\">Click this link for tutorials on how to use the Spectragui<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><a href=\"https:\/\/depts.washington.edu\/nesacbio\/wordpress\/nbtoolbox-information-and-download-request\/\">Click this link to access the form to request a copy of the NBToolbox<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Spectragui Features Click this link for tutorials on how to use the Spectragui Click this link to access the form to request a copy of the NBToolbox<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-559","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/pages\/559","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/comments?post=559"}],"version-history":[{"count":5,"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/pages\/559\/revisions"}],"predecessor-version":[{"id":640,"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/pages\/559\/revisions\/640"}],"wp:attachment":[{"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/media?parent=559"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}