{"id":641,"date":"2025-12-17T23:28:27","date_gmt":"2025-12-17T23:28:27","guid":{"rendered":"https:\/\/depts.washington.edu\/nesacbio\/wordpress\/?page_id=641"},"modified":"2025-12-17T23:43:42","modified_gmt":"2025-12-17T23:43:42","slug":"nbtoolbox-zcorrectorgui-information","status":"publish","type":"page","link":"https:\/\/depts.washington.edu\/nesacbio\/nbtoolbox-zcorrectorgui-information\/","title":{"rendered":"NBtoolbox Zcorrectorgui Information"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><strong>Zcorrectorgui features:<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Import .bif,.bif6, or .bif3d image files (Iontof)<\/li>\n\n\n\n<li>Import data from workspace<\/li>\n\n\n\n<li>down bin data (can avoid Matlab memory overload for large data sets)<\/li>\n\n\n\n<li>Correct Z-axis of depth profile data<\/li>\n\n\n\n<li>View and rotate corrected and uncorrected data in 3D (change colormap, background color, transparency)<\/li>\n\n\n\n<li>Create RGB overlays of either corrected or uncorrected data (2D and 3D)<\/li>\n\n\n\n<li>Create isosurface plots (select individual intensity or a range of intensities)<\/li>\n\n\n\n<li>Overlay isosurfaces in 3D<\/li>\n\n\n\n<li>Isolate and view selected slices from 3D data<\/li>\n\n\n\n<li>Set different transparency for different slices of 3D data set<\/li>\n\n\n\n<li>Export still shots and movies of XY, XZ, and YZ slice data<\/li>\n\n\n\n<li>Create and export movies showing rotation of 3D depth profile data sets<\/li>\n\n\n\n<li>3D PCA (beta version. More features coming soon)<\/li>\n\n\n\n<li>Color overlay (enables isolating individual colors or combinations of colors in 3D)<\/li>\n<\/ul>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"765\" src=\"https:\/\/depts.washington.edu\/nesacbio\/wordpress\/wp-content\/uploads\/2025\/12\/Zcorrectorgui_3Dtools-1024x765.jpg\" alt=\"\" class=\"wp-image-642\" srcset=\"https:\/\/depts.washington.edu\/nesacbio\/wordpress\/wp-content\/uploads\/2025\/12\/Zcorrectorgui_3Dtools-1024x765.jpg 1024w, https:\/\/depts.washington.edu\/nesacbio\/wordpress\/wp-content\/uploads\/2025\/12\/Zcorrectorgui_3Dtools-300x224.jpg 300w, https:\/\/depts.washington.edu\/nesacbio\/wordpress\/wp-content\/uploads\/2025\/12\/Zcorrectorgui_3Dtools-768x574.jpg 768w, https:\/\/depts.washington.edu\/nesacbio\/wordpress\/wp-content\/uploads\/2025\/12\/Zcorrectorgui_3Dtools.jpg 1272w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-element-caption\">Example screenshot from the zcorrectorgui showing the 3D plotting interface.<\/figcaption><\/figure>\n\n\n\n<p class=\"wp-block-paragraph\"><a href=\"https:\/\/depts.washington.edu\/nesacbio\/wordpress\/zcorrectorgui-tutorials-page\/\">Click this link for tutorials on how to use the Zcorrectorgui<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><a href=\"https:\/\/depts.washington.edu\/nesacbio\/wordpress\/nbtoolbox-information-and-download-request\/\">Click this link to access the form to request a copy of the NBToolbox<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Zcorrectorgui features: Click this link for tutorials on how to use the Zcorrectorgui Click this link to access the form to request a copy of the NBToolbox<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-641","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/pages\/641","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/comments?post=641"}],"version-history":[{"count":3,"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/pages\/641\/revisions"}],"predecessor-version":[{"id":659,"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/pages\/641\/revisions\/659"}],"wp:attachment":[{"href":"https:\/\/depts.washington.edu\/nesacbio\/wp-json\/wp\/v2\/media?parent=641"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}