{"id":1070,"date":"2017-09-06T20:03:04","date_gmt":"2017-09-06T20:03:04","guid":{"rendered":"http:\/\/depts.washington.edu\/rablab\/?p=1070"},"modified":"2017-09-06T20:03:04","modified_gmt":"2017-09-06T20:03:04","slug":"exonic-mosaic-mutations-asd","status":"publish","type":"post","link":"https:\/\/depts.washington.edu\/rablab\/2017\/09\/06\/exonic-mosaic-mutations-asd\/","title":{"rendered":"New publication on how Exonic Mosaic Mutations contribute to the risk of ASD"},"content":{"rendered":"<h6>Exonic Mosaic Mutations Contribute Risk for Autism Spectrum Disorder<\/h6>\n<p>Krupp, D.R., Barnard, R.A., Duffourd, Y., Evans, S.A., Mulqueen, R.M., Bernier, R., Riviere, JB., Fombonne, E., O&#8217;Roak, B.J. (2017) The Journal of Human Genetics.<\/p>\n<p>Full Article:\u00a0<a href=\"http:\/\/depts.washington.edu\/rablab\/2017\/09\/06\/exonic-mosaic-mutations-asd\/exonic-mosaic-mutations-asd-2017-min\/\" rel=\"attachment wp-att-1072\">Exonic Mosaic Mutations ASD 2017-min<\/a><\/p>\n<h6>ABSTRACT<\/h6>\n<div id=\"pb-page-content\" data-ng-non-bindable=\"\">\n<div data-pb-dropzone-name=\"Main\" data-pb-dropzone=\"main\">\n<div id=\"pageMainContent\" class=\"widget page-main-content none widget-none widget-compact-all\">\n<div class=\"wrapped \">\n<div class=\"widget-body body body-none body-compact-all\">\n<div data-pb-dropzone=\"contents\">\n<div id=\"pageBody\" class=\"widget pageBody none widget-none\">\n<div class=\"wrapped \">\n<div class=\"widget-body body body-none \">\n<div class=\"page-body pagefulltext\">\n<div data-pb-dropzone=\"main\">\n<div id=\"132bb34f-2bde-4cc6-8aa3-b77a3dbea5cd\" class=\"widget layout-two-columns none cellArtContent widget-none widget-compact-all\">\n<div class=\"wrapped \">\n<div class=\"widget-body body body-none body-compact-all\">\n<div class=\"pb-columns row-fluid \">\n<div class=\"width_1_1 extendedCellArt\">\n<div class=\"pb-autoheight\" data-pb-dropzone=\"left\">\n<div id=\"b4b50903-9890-44bc-87f9-d2c95bf00658\" class=\"widget articleContent none widget-none\">\n<div class=\"wrapped \">\n<div class=\"widget-body body body-none \">\n<div id=\"article\" class=\"article showFullText enhancedResearch enhanced doctopic-1- label-\">\n<div class=\"tabs tabs-widget\">\n<div id=\"artTabContent\" class=\"tab-content sn_showFullText\">\n<div class=\"fullText\">\n<section id=\"Abstract\" class=\"abstract\">\n<div class=\"content\">\n<p>Genetic risk factors for autism spectrum disorder (ASD) have yet to be fully elucidated. Postzygotic mosaic mutations (PMMs) have been implicated in several neurodevelopmental disorders and overgrowth syndromes. By leveraging whole-exome sequencing data on a large family-based ASD cohort, the Simons Simplex Collection, we systematically evaluated the potential role of PMMs in autism risk. Initial re-evaluation of published single-nucleotide variant (SNV) <em>de novo<\/em> mutations showed evidence consistent with putative PMMs for 11% of mutations. We developed a robust and sensitive SNV PMM calling approach integrating complementary callers, logistic regression modeling, and additional heuristics. In our high-confidence call set, we identified 470 PMMs in children, increasing the proportion of mosaic SNVs to 22%. Probands have a significant burden of synonymous PMMs and these mutations are enriched for computationally predicted impacts on splicing. Evidence of increased missense PMM burden was not seen in the full cohort. However, missense burden signal increased in subcohorts of families where probands lacked nonsynonymous germline mutations, especially in genes intolerant to mutations. Parental mosaic mutations that were transmitted account for 6.8% of the presumed <em>de novo<\/em> mutations in the children. PMMs were identified in previously implicated high-confidence neurodevelopmental disorder risk genes, such as <em>CHD2<\/em>, <em>CTNNB1<\/em>, <em>SCN2A<\/em>, and <em>SYNGAP1<\/em>, as well as candidate risk genes with predicted functions in chromatin remodeling or neurodevelopment, including <em>ACTL6B<\/em>, <em>BAZ2B<\/em>, <em>COL5A3<\/em>, <em>SSRP1<\/em>, and <em>UNC79<\/em>. We estimate that PMMs potentially contribute risk to 3%-4% of simplex ASD case subjects and future studies of PMMs in ASD and related disorders are warranted.<\/p>\n<\/div>\n<\/section>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Exonic Mosaic Mutations Contribute Risk for Autism Spectrum Disorder Krupp, D.R., Barnard, R.A., Duffourd, Y., Evans, S.A., Mulqueen, R.M., Bernier, R., Riviere, JB., Fombonne, E., O&#8217;Roak, B.J. (2017) The Journal of Human Genetics. Full Article:\u00a0Exonic Mosaic Mutations ASD 2017-min ABSTRACT Genetic risk factors for autism spectrum disorder (ASD) have yet to be fully elucidated. Postzygotic &hellip; <a href=\"https:\/\/depts.washington.edu\/rablab\/2017\/09\/06\/exonic-mosaic-mutations-asd\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">New publication on how Exonic Mosaic Mutations contribute to the risk of ASD<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"class_list":["post-1070","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/depts.washington.edu\/rablab\/wp-json\/wp\/v2\/posts\/1070","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/depts.washington.edu\/rablab\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/depts.washington.edu\/rablab\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/rablab\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/rablab\/wp-json\/wp\/v2\/comments?post=1070"}],"version-history":[{"count":3,"href":"https:\/\/depts.washington.edu\/rablab\/wp-json\/wp\/v2\/posts\/1070\/revisions"}],"predecessor-version":[{"id":1074,"href":"https:\/\/depts.washington.edu\/rablab\/wp-json\/wp\/v2\/posts\/1070\/revisions\/1074"}],"wp:attachment":[{"href":"https:\/\/depts.washington.edu\/rablab\/wp-json\/wp\/v2\/media?parent=1070"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/depts.washington.edu\/rablab\/wp-json\/wp\/v2\/categories?post=1070"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/depts.washington.edu\/rablab\/wp-json\/wp\/v2\/tags?post=1070"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}