File:          Type           Description
=====================================================================
gh            executable      a link to the installed Genehunter 2 program
=====================================================================
files.txt     read-me         this file
readme.txt    read-me         background to these examples (not needed)
=====================================================================

datafile.2    parameter file  2 loci; trait + 1 marker; q=0.001;
datafile.3    parameter file  3 loci; trait + 2 marker; q=0.001;
datafile.6    parameter file  6 loci; trait + 5 marker; q=0.001; 
datafile2.6   parameter file  6 loci; trait + 5 marker; q=0.05

(For all data files the marker allele frequencies are (0.2, 0.2, 0.4, 0.2)
 at all markers, and there is recombination frequency 0.2 between markers)
=====================================================================

jvgh.2       pedigree file   for 1 marker; only 531 observed for marker
jvgh.3       pedigree file   for 2 marker; only 531 observed for markers
jvgh.6       pedigree file   for 5 marker; only 531 observed for markers

jvgh.6n      pedigree file   for 5 marker; 5 individuals have marker data

jv2gh.2n     pedigree file   for 1 marker; 5 inds have marker data; new names
jv2gh.3n     pedigree file   for 2 marker; 5 inds have marker data; new names
jv2gh.6n     pedigree file   for 5 marker; 5 inds have marker data; new names

Where individuals are observed they are given our canonical data
The "new names", are those of the figure, also used in other examples
    obviously changing the "names" of individuals does not change the lods.
=====================================================================

jv2.out       output      using datafile.2 and jvgh.2
jv3.out       output      using datafile.3 and jvgh.3
jv6.out       output      using datafile.6 and jvgh.6
jv6.out2      output      using datafile2.6 and jvgh6
jv6.new.out2  output      using datafile2.6 and jvgh.6n

=====================================================================

Not all of these files have been tested; in particular
jv2gh.2n, jv2gh.3n  have not been checked out.

=====================================================================

EAT 5/29/00