{"id":897,"date":"2024-05-31T01:10:59","date_gmt":"2024-05-31T01:10:59","guid":{"rendered":"https:\/\/depts.washington.edu\/uwvirus\/?page_id=897"},"modified":"2024-05-31T08:00:48","modified_gmt":"2024-05-31T08:00:48","slug":"publications","status":"publish","type":"page","link":"https:\/\/depts.washington.edu\/uwvirus\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<form class=\"impactpubs_years-ctls\" id=\"impactpubs_years-ctls\">\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2024\" id=\"impactpubs_years-ctl_2024\"\n\t\t\t\t\t checked  \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2024\"><a>2024<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2023\" id=\"impactpubs_years-ctl_2023\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2023\"><a>2023<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2022\" id=\"impactpubs_years-ctl_2022\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2022\"><a>2022<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2021\" id=\"impactpubs_years-ctl_2021\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2021\"><a>2021<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2020\" id=\"impactpubs_years-ctl_2020\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2020\"><a>2020<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2019\" id=\"impactpubs_years-ctl_2019\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2019\"><a>2019<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2018\" id=\"impactpubs_years-ctl_2018\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2018\"><a>2018<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2017\" id=\"impactpubs_years-ctl_2017\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2017\"><a>2017<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2016\" id=\"impactpubs_years-ctl_2016\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2016\"><a>2016<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2015\" id=\"impactpubs_years-ctl_2015\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2015\"><a>2015<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2014\" id=\"impactpubs_years-ctl_2014\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2014\"><a>2014<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2013\" id=\"impactpubs_years-ctl_2013\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2013\"><a>2013<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2012\" id=\"impactpubs_years-ctl_2012\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2012\"><a>2012<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2010\" id=\"impactpubs_years-ctl_2010\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2010\"><a>2010<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2009\" id=\"impactpubs_years-ctl_2009\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2009\"><a>2009<\/a><\/label>\n\n\t\t\t\n\t\t\t\t<input type=\"radio\" class=\"impactpubs_years-ctl\" name=\"impactpubs_years-ctl\"\n\t\t\t\t\tvalue=\"2008\" id=\"impactpubs_years-ctl_2008\"\n\t\t\t\t\t \/>\n\t\t\t\t<label for=\"impactpubs_years-ctl_2008\"><a>2008<\/a><\/label>\n\n\t\t\t<\/form><p class=\"impactpubs_publication\" id=\"38805234\" data-year=\"2024\"><span class = \"ip-authors\"> Casto AM; Song H; Xie H; Selke S; Roychoudhury P; Wu MC; Wald A; Greninger AL; Johnston C<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38805234\">Viral genomic variation and the severity of genital HSV-2 infection as quantified by shedding rate: a viral genome-wide association study.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38334328\" data-year=\"2024\"><span class = \"ip-authors\"> Rasmussen AL; Gronvall GK; Lowen AC; Goodrum F; Alwine J; Andersen KG; Anthony SJ; Baines J; Banerjee A; Broadbent AJ; Brooke CB; Campos SK; Caposio P; Casadevall A; Chan GC; Cliffe AR; Collins-McMillen D; Connell N; Damania B; Daugherty MD; Debbink K; Dermody TS; DiMaio D; Duprex WP; Emerman M; Galloway DA; Garry RF; Goldstein SA; Greninger AL; Hartman AL; Hogue BG; Horner SM; Hotez PJ; Jung JU; Kamil JP; Karst SM; Laimins L; Lakdawala SS; Landais I; Letko M; Lindenbach B; Liu S-L; Luftig M; McFadden G; Mehle A; Morrison J; Moscona A; M\u00fchlberger E; Munger J; M\u00fcnger K; Murphy E; Neufeldt CJ; Nikolich JZ; O'Connor CM; Pekosz A; Permar SR; Pfeiffer JK; Popescu SV; Purdy JG; Racaniello VR; Rice CM; Runstadler JA; Sapp MJ; Scott RS; Smith GA; Sorrell EM; Speranza E; Streblow D; Tibbetts SA; Toth Z; Van Doorslaer K; Weiss SR; White EA; White TM; Wobus CE; Worobey M; Yamaoka S; Yurochko A<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38334328\">Correction for Rasmussen et al., \"Virology-the path forward\".<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">98(3):e0007424<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"37769216\" data-year=\"2024\"><span class = \"ip-authors\"> Lieberman NAP; Avenda\u00f1o CC; Bakhash SAKM; Nunley E; Xie H; Giacani L; Berzkalns A; Soge OO; Reid TB; Golden MR; Greninger AL<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37769216\">Genomic Epidemiology of Treponema pallidum and Circulation of Strains With Diminished tprK Antigen Variation Capability in Seattle, 2021-2022.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">229(3):866-875<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"37486790\" data-year=\"2024\"><span class = \"ip-authors\"> Makhsous N; Goya S; Avenda\u00f1o CC; Rupp J; Kuypers J; Jerome KR; Boeckh M; Waghmare A; Greninger AL<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37486790\">Within-Host Rhinovirus Evolution in Upper and Lower Respiratory Tract Highlights Capsid Variability and Mutation-Independent Compartmentalization.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">229(2):403-412<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38057617\" data-year=\"2024\"><span class = \"ip-authors\"> Ford ES; Mayer-Blackwell K; Jing L; Laing KJ; Sholukh AM; St Germain R; Bossard EL; Xie H; Pulliam TH; Jani S; Selke S; Burrow CJ; McClurkan CL; Wald A; Greninger AL; Holbrook MR; Eaton B; Eudy E; Murphy M; Postnikova E; Robins HS; Elyanow R; Gittelman RM; Ecsedi M; Wilcox E; Chapuis AG; Fiore-Gartland A; Koelle DM<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38057617\">Repeated mRNA vaccination sequentially boosts SARS-CoV-2-specific CD8(+) T cells in persons with previous COVID-19.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Immunol<\/span> <span class = \"ip-vol\">25(1):166-177<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38113685\" data-year=\"2024\"><span class = \"ip-authors\"> Reed J; Kwak G; Piliper EA; Degli-Angeli EJ; Goecker EA; Greninger AL<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38113685\">Validation of digital droplet PCR assays for cell-associated HIV-1 DNA, HIV-1 2-LTR circle, and HIV-1 unspliced RNA for clinical studies in HIV-1 cure research.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">170:105632<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38775470\" data-year=\"2024\"><span class = \"ip-authors\"> Powell EA; Greninger AL; Marlowe EM; Naccache SN; Doern CD<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38775470\">Proceedings of the Clinical Microbiology Open 2023: discussions about pandemic preparedness.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38168672\" data-year=\"2024\"><span class = \"ip-authors\"> Rasmussen AL; Gronvall GK; Lowen AC; Goodrum F; Alwine J; Andersen KG; Anthony SJ; Baines J; Banerjee A; Broadbent AJ; Brooke CB; Campos SK; Caposio P; Casadevall A; Chan GC; Cliffe AR; Collins-McMillen D; Connell N; Damania B; Daugherty MD; Debbink K; Dermody TS; DiMaio D; Duprex WP; Emerman M; Galloway DA; Garry RF; Goldstein SA; Greninger AL; Hartman AL; Hogue BG; Horner SM; Hotez PJ; Jung JU; Kamil JP; Karst SM; Laimins L; Lakdawala SS; Landais I; Letko M; Lindenbach B; Liu S-L; Luftig M; McFadden G; Mehle A; Morrison J; Moscona A; M\u00fchlberger E; Munger J; M\u00fcnger K; Murphy E; Neufeldt CJ; Nikolich JZ; O'Connor CM; Pekosz A; Permar SR; Pfeiffer JK; Popescu SV; Purdy JG; Racaniello VR; Rice CM; Runstadler JA; Sapp MJ; Scott RS; Smith GA; Sorrell EM; Speranza E; Streblow D; Tibbetts SA; Toth Z; Van Doorslaer K; Weiss SR; White EA; White TM; Wobus CE; Worobey M; Yamaoka S; Yurochko A<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38168672\">Virology-the path forward.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">98(1):e0179123<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38211601\" data-year=\"2024\"><span class = \"ip-authors\"> Ubals M; Nadal-Baron P; Arando M; Rivero \u00c1; Mendoza A; Descalzo Jorro V; Ouchi D; P\u00e9rez-Ma\u00f1\u00e1 C; \u00c1lvarez M; Alemany A; Hoyos-Mallecot Y; Nunley E; Lieberman NAP; Greninger AL; Galv\u00e1n-Casas C; Su\u00f1er C; G-Beiras C; Paredes R; Rodr\u00edguez-Gasc\u00f3n A; Canut A; Garc\u00eda-Patos V; Farr\u00e9 M; Marks M; Giacani L; Vall-Mayans M; Mitj\u00e0 O<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38211601\">Oral linezolid compared with benzathine penicillin G for treatment of early syphilis in adults (Trep-AB Study) in Spain: a prospective, open-label, non-inferiority, randomised controlled trial.<\/a><\/span> &nbsp<span class = \"ip-journal\">Lancet Infect Dis<\/span> <span class = \"ip-vol\">24(4):404-416<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38241046\" data-year=\"2024\"><span class = \"ip-authors\"> Kachikis A; Pike M; Eckert LO; Roberts E; Frank Y; Young AL; Goecker E; Gravett MG; Greninger AL; Englund JA<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38241046\">Timing of Maternal COVID-19 Vaccine and Antibody Concentrations in Infants Born Preterm.<\/a><\/span> &nbsp<span class = \"ip-journal\">JAMA Netw Open<\/span> <span class = \"ip-vol\">7(1):e2352387<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38285008\" data-year=\"2024\"><span class = \"ip-authors\"> LaCourse SM; Wetzler EA; Aurelio MC; Escudero JN; Selke SS; Greninger AL; Goecker EA; Barnes SR; Arnould IS; P\u00e9rez-Osorio AC; Richardson BA; Kachikis A; Englund JA; Drake AL<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38285008\">Hybrid Immunity to Severe Acute Respiratory Syndrome Coronavirus 2 During Pregnancy Provides More Durable Infant Antibody Responses Compared to Natural Infection or Vaccination Alone.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">229(4):1241-1243<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38301634\" data-year=\"2024\"><span class = \"ip-authors\"> Golden MR; Soge OO; Mills M; Berzkalns A; Cannon C; Ramchandani M; Dombrowski JC; Karmarkar EN; Chow EJ; Gov JP; Swenson P; Greninger AL<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38301634\">Asymptomatic and Subclinical Mpox: An Association With Modified Vaccinia Ankara Vaccine.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sex Transm Dis<\/span> <span class = \"ip-vol\">51(5):342-347<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38331906\" data-year=\"2024\"><span class = \"ip-authors\"> Cox RM; Wolf JD; Lieberman NA; Lieber CM; Kang HJ; Sticher ZM; Yoon JJ; Andrews MK; Govindarajan M; Krueger RE; Sobolik EB; Natchus MG; Gewirtz AT; deSwart RL; Kolykhalov AA; Hekmatyar K; Sakamoto K; Greninger AL; Plemper RK<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38331906\">Therapeutic mitigation of measles-like immune amnesia and exacerbated disease after prior respiratory virus infections in ferrets.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">15(1):1189<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38300953\" data-year=\"2024\"><span class = \"ip-authors\"> Lieber CM; Kang HJ; Aggarwal M; Lieberman NA; Sobolik EB; Yoon JJ; Natchus MG; Cox RM; Greninger AL; Plemper RK<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38300953\">Influenza A virus resistance to 4'-fluorouridine coincides with viral attenuation in vitro and in vivo.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Pathog<\/span> <span class = \"ip-vol\">20(2):e1011993<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38379566\" data-year=\"2024\"><span class = \"ip-authors\"> Babu TM; Shen X; McClelland RS; Wang Z; Selke S; Wilkens C; Hauge KA; McClurkan CL; Goecker E; Laing KJ; Koelle DM; Greninger AL; Nussenzweig MC; Montefiori DC; Corey L; Wald A<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38379566\">Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Subvariant Neutralization Following a Primary Vaccine Series of NVX-CoV2373 and BNT162b2 Monovalent Booster Vaccine.<\/a><\/span> &nbsp<span class = \"ip-journal\">Open Forum Infect Dis<\/span> <span class = \"ip-vol\">11(2):ofad673<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38743457\" data-year=\"2024\"><span class = \"ip-authors\"> Boonyaratanakornkit J; Wang Q; Nader A; Kimball L; Stevens-Ayers T; Levkova M; Blazevic R; Nguyen J; Wright J; Castor J; Greninger AL; Ford E; Mielcarek M; Fordred S; Han J; Boeckh M; Waghmare A<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38743457\">The effect of gastrointestinal graft-versus-host disease and diarrhea on the pharmacokinetic profile of sotrovimab in hematopoietic stem cell transplant recipients.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38464313\" data-year=\"2024\"><span class = \"ip-authors\"> Reid TB; Godornes C; Campbell VL; Laing KJ; Tantalo LC; Gomez A; Pholsena TN; Lieberman NAP; Krause TM; Cegielski VI; Culver LA; Nguyen N; Tong DQ; Hawley KL; Greninger AL; Giacani L; Cameron CE; Dombrowski JC; Wald A; Koelle DM<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38464313\">Treponema pallidum periplasmic and membrane proteins are recognized by circulating and skin CD4+ T cells.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38467646\" data-year=\"2024\"><span class = \"ip-authors\"> Magaret CA; Li L; deCamp AC; Rolland M; Juraska M; Williamson BD; Ludwig J; Molitor C; Benkeser D; Luedtke A; Simpkins B; Heng F; Sun Y; Carpp LN; Bai H; Dearlove BL; Giorgi EE; Jongeneelen M; Brandenburg B; McCallum M; Bowen JE; Veesler D; Sadoff J; Gray GE; Roels S; Vandebosch A; Stieh DJ; Le Gars M; Vingerhoets J; Grinsztejn B; Goepfert PA; de Sousa LP; Silva MST; Casapia M; Losso MH; Little SJ; Gaur A; Bekker LG; Garrett N; Truyers C; Van Dromme I; Swann E; Marovich MA; Follmann D; Neuzil KM; Corey L; Greninger AL; Roychoudhury P; Hyrien O; Gilbert PB<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38467646\">Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">15(1):2175<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38530853\" data-year=\"2024\"><span class = \"ip-authors\"> Paredes MI; Perofsky AC; Frisbie L; Moncla LH; Roychoudhury P; Xie H; Bakhash SAM; Kong K; Arnould I; Nguyen TV; Wendm ST; Hajian P; Ellis S; Mathias PC; Greninger AL; Starita LM; Frazar CD; Ryke E; Zhong W; Gamboa L; Threlkeld M; Lee J; Stone J; McDermot E; Truong M; Shendure J; Oltean HN; Viboud C; Chu H; M\u00fcller NF; Bedford T<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38530853\">Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Pathog<\/span> <span class = \"ip-vol\">20(3):e1012117<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38559000\" data-year=\"2024\"><span class = \"ip-authors\"> Kubinski HC; Despres HW; Johnson BA; Schmidt MM; Jaffrani SA; Mills MG; Lokugamage K; Dumas CM; Shirley DJ; Estes LK; Pekosz A; Crothers JW; Roychoudhury P; Greninger AL; Jerome KR; Di Genova BM; Walker DH; Ballif BA; Ladinsky MS; Bjorkman PJ; Menachery VD; Bruce EA<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38559000\">Variant mutation in SARS-CoV-2 nucleocapsid enhances viral infection via altered genomic encapsidation.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38615031\" data-year=\"2024\"><span class = \"ip-authors\"> Wagner C; Kistler KE; Perchetti GA; Baker N; Frisbie LA; Torres LM; Aragona F; Yun C; Figgins M; Greninger AL; Cox A; Oltean HN; Roychoudhury P; Bedford T<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38615031\">Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">15(1):3207<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38657001\" data-year=\"2024\"><span class = \"ip-authors\"> Singh K; Rubenstein K; Callier V; Shaw-Saliba K; Rupert A; Dewar R; Laverdure S; Highbarger H; Lallemand P; Huang ML; Jerome KR; Sampoleo R; Mills MG; Greninger AL; Juneja K; Porter D; Benson CA; Dempsey W; El Sahly HM; Focht C; Jilg N; Paules CI; Rapaka RR; Uyeki TM; Lane HC; Beigel J; Dodd LE<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38657001\">SARS-CoV-2 RNA and nucleocapsid antigen are blood biomarkers associated with severe disease outcomes that improve in response to remdesivir.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38427848\" data-year=\"2024\"><span class = \"ip-authors\"> Nimgaonkar I; Yoke LH; Roychoudhury P; Flaherty PW; Oshima MU; Weixler A; Gauthier J; Greninger AL; Mielcarek M; Boeckh M; Liu C; Hill JA<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38427848\">Outcomes in Hematopoietic Cell Transplant and Chimeric Antigen Receptor T Cell Therapy Recipients with Pre-Cellular Therapy SARS-CoV-2 Infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38687020\" data-year=\"2024\"><span class = \"ip-authors\"> Crawford KHD; Selke S; Pepper G; Goecker E; Sobel A; Wald A; Johnston C; Greninger AL<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38687020\">Performance characteristics of highly automated HSV-1 and HSV-2 IgG testing.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38716969\" data-year=\"2024\"><span class = \"ip-authors\"> Choudhary MC; Deo R; Evering TH; Chew KW; Giganti MJ; Moser C; Ritz J; Regan J; Flynn JP; Crain CR; Wohl DA; Currier JS; Eron JJ; Margolis D; Zhu Q; Zhon L; Ya L; Greninger AL; Hughes MD; Smith D; Daar ES; Li JZ<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38716969\">Characterization of treatment resistance and viral kinetics in the setting of single- versus dual-active monoclonal antibodies against SARS-CoV-2.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication\" id=\"38771118\" data-year=\"2024\"><span class = \"ip-authors\"> Heldman MR; Greninger AL; Hill JA<\/span>, <span class = \"ip-date\">2024<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38771118\">The iciHHV-6 sense: sensing the source and relevance of human herpesvirus 6 (HHV-6) DNA in the transplant recipient with inherited chromosomally integrated HHV-6.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36802755\" data-year=\"2023\"><span class = \"ip-authors\"> Deo R; Choudhary MC; Moser C; Ritz J; Daar ES; Wohl DA; Greninger AL; Eron JJ; Currier JS; Hughes MD; Smith DM; Chew KW; Li JZ<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36802755\">Symptom and Viral Rebound in Untreated SARS-CoV-2 Infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">Ann Intern Med<\/span> <span class = \"ip-vol\">176(3):348-354<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36851745\" data-year=\"2023\"><span class = \"ip-authors\"> Hao L; Hsiang TY; Dalmat RR; Ireton R; Morton JF; Stokes C; Netland J; Hale M; Thouvenel C; Wald A; Franko NM; Huden K; Chu HY; Sigal A; Greninger AL; Tilles S; Barrett LK; Van Voorhis WC; Munt J; Scobey T; Baric RS; Rawlings DJ; Pepper M; Drain PK; Gale M Jr<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36851745\">Dynamics of SARS-CoV-2 VOC Neutralization and Novel mAb Reveal Protection against Omicron.<\/a><\/span> &nbsp<span class = \"ip-journal\">Viruses<\/span> <span class = \"ip-vol\">15<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36940224\" data-year=\"2023\"><span class = \"ip-authors\"> Romeis E; Lieberman NAP; Molini B; Tantalo LC; Chung B; Phung Q; Avenda\u00f1o C; Vorobieva A; Greninger AL; Giacani L<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36940224\">Treponema pallidum subsp. pallidum with an Artificially impaired TprK antigenic variation system is attenuated in the Rabbit model of syphilis.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Pathog<\/span> <span class = \"ip-vol\">19(3):e1011259<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36856712\" data-year=\"2023\"><span class = \"ip-authors\"> Cheng GS; Crothers K; Aliberti S; Bergeron A; Boeckh M; Chien JW; Cilloniz C; Cohen K; Dean N; Dela Cruz CS; Dickson RP; Greninger AL; Hage CA; Hohl TM; Holland SM; Jones BE; Keane J; Metersky M; Miller R; Puel A; Ramirez J; Restrepo MI; Sheshadri A; Staitieh B; Tarrand J; Winthrop KL; Wunderink RG; Evans SE<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36856712\">Immunocompromised Host Pneumonia: Definitions and Diagnostic Criteria: An Official American Thoracic Society Workshop Report.<\/a><\/span> &nbsp<span class = \"ip-journal\">Ann Am Thorac Soc<\/span> <span class = \"ip-vol\">20(3):341-353<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36878012\" data-year=\"2023\"><span class = \"ip-authors\"> Goya S; Sereewit J; Pfalmer D; Nguyen TV; Bakhash SAKM; Sobolik EB; Greninger AL<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36878012\">Genomic Characterization of Respiratory Syncytial Virus during 2022-23 Outbreak, Washington, USA.<\/a><\/span> &nbsp<span class = \"ip-journal\">Emerg Infect Dis<\/span> <span class = \"ip-vol\">29(4):865-868<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36913789\" data-year=\"2023\"><span class = \"ip-authors\"> Drain PK; Dalmat RR; Hao L; Bemer MJ; Budiawan E; Morton JF; Ireton RC; Hsiang TY; Marfatia Z; Prabhu R; Woosley C; Gichamo A; Rechkina E; Hamilton D; Monta\u00f1o M; Cantera JL; Ball AS; Golez I; Smith E; Greninger AL; McElrath MJ; Thompson M; Grant BD; Meisner A; Gottlieb GS; Gale M Jr<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36913789\">Duration of viral infectiousness and correlation with symptoms and diagnostic testing in non-hospitalized adults during acute SARS-CoV-2 infection: A longitudinal cohort study.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">161:105420<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36993419\" data-year=\"2023\"><span class = \"ip-authors\"> Moser CB; Chew KW; Giganti MJ; Li JZ; Aga E; Ritz J; Greninger AL; Javan AC; Daar ES; Currier JS; Eron JJ; Smith DM; Hughes MD<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36993419\">Statistical Challenges when Analyzing SARS-CoV-2 RNA Measurements Below the Assay Limit of Quantification in COVID-19 Clinical Trials.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36797293\" data-year=\"2023\"><span class = \"ip-authors\"> Pettit R; Peng B; Yu P; Matos PG; Greninger AL; McCashin J; Amos CI<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36797293\">Optimized workplace risk mitigation measures for SARS-CoV-2 in 2022.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">13(1):2779<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36798414\" data-year=\"2023\"><span class = \"ip-authors\"> Rao A; Westbrook A; Bassit L; Parsons R; Fitts E; Greenleaf M; McLendon K; Sullivan JA; O'Sick W; Baugh T; Bowers HB; Frank F; Wang E; Le M; Frediani J; Roychoudhury P; Greninger AL; Jerris R; Pollock NR; Ortlund EA; Roback JD; Lam WA; Piantadosi A<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36798414\">Sensitivity of Rapid Antigen Tests Against SARS-CoV-2 Omicron and Delta Variants.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36326680\" data-year=\"2023\"><span class = \"ip-authors\"> Ford ES; Simmons W; Karmarkar EN; Yoke LH; Braimah AB; Orozco JJ; Ghiuzeli CM; Barnhill S; Sack CL; Benditt JO; Roychoudhury P; Greninger AL; Shapiro AE; Hammond JL; Rusnak JM; Dolsten M; Boeckh M; Liu C; Cheng GS; Corey L<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36326680\">Successful Treatment of Prolonged, Severe Coronavirus Disease 2019 Lower Respiratory Tract Disease in a B cell Acute Lymphoblastic Leukemia Patient With an Extended Course of Remdesivir and Nirmatrelvir\/Ritonavir.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">76(5):926-929<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36763666\" data-year=\"2023\"><span class = \"ip-authors\"> Marcink TC; Zipursky G; Cheng W; Stearns K; Stenglein S; Golub K; Cohen F; Bovier F; Pfalmer D; Greninger AL; Porotto M; des Georges A; Moscona A<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36763666\">Subnanometer structure of an enveloped virus fusion complex on viral surface reveals new entry mechanisms.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Adv<\/span> <span class = \"ip-vol\">9(6):eade2727<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36732066\" data-year=\"2023\"><span class = \"ip-authors\"> Roychoudhury P; Sereewit J; Xie H; Nunley E; Bakhash SM; Lieberman NAP; Greninger AL<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36732066\">Genomic Analysis of Early Monkeypox Virus Outbreak Strains, Washington, USA.<\/a><\/span> &nbsp<span class = \"ip-journal\">Emerg Infect Dis<\/span> <span class = \"ip-vol\">29(3):644-646<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36711914\" data-year=\"2023\"><span class = \"ip-authors\"> Romeis E; Lieberman NAP; Molini B; Tantalo LC; Chung B; Phung Q; Avenda\u00f1o C; Vorobieva A; Greninger AL; Giacani L<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36711914\">Treponema pallidum subsp. pallidum with an Artificially Impaired TprK Antigenic Variation System is Attenuated in the Rabbit Model of Syphilis.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36693927\" data-year=\"2023\"><span class = \"ip-authors\"> Perchetti GA; Biernacki MA; Xie H; Castor J; Joncas-Schronce L; Ueda Oshima M; Kim Y; Jerome KR; Sandmaier BM; Martin PJ; Boeckh M; Greninger AL; Zamora D<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36693927\">Cytomegalovirus breakthrough and resistance during letermovir prophylaxis.<\/a><\/span> &nbsp<span class = \"ip-journal\">Bone Marrow Transplant<\/span> <span class = \"ip-vol\">58(4):430-436<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36661240\" data-year=\"2023\"><span class = \"ip-authors\"> Taiwo BO; Chew KW; Moser C; Wohl DA; Daar ES; Li JZ; Greninger AL; Bausch C; Luke T; Hoover K; Neytman G; Giganti MJ; Olefsky M; Javan AC; Fletcher CV; Eron JJ; Currier JS; Hughes MD; Smith DM<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36661240\">Phase 2 Safety and Antiviral Activity of SAB-185, a Novel Polyclonal Antibody Therapy for Nonhospitalized Adults With COVID-19.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">228(2):133-142<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36603329\" data-year=\"2023\"><span class = \"ip-authors\"> Mills MG; Juergens KB; Gov JP; McCormick CJ; Sampoleo R; Kachikis A; Amory JK; Fang FC; P\u00e9rez-Osorio AC; Lieberman NAP; Greninger AL<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36603329\">Evaluation and clinical validation of monkeypox (mpox) virus real-time PCR assays.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">159:105373<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36596565\" data-year=\"2023\"><span class = \"ip-authors\"> Oltean HN; Allen KJ; Frisbie L; Lunn SM; Torres LM; Manahan L; Painter I; Russell D; Singh A; Peterson JM; Grant K; Peter C; Cao R; Garcia K; Mackellar D; Jones L; Halstead H; Gray H; Melly G; Nickerson D; Starita L; Frazar C; Greninger AL; Roychoudhury P; Mathias PC; Kalnoski MH; Ting CN; Lykken M; Rice T; Gonzalez-Robles D; Bina D; Johnson K; Wiley CL; Magnuson SC; Parsons CM; Chapman ED; Valencia CA; Fortna RR; Wolgamot G; Hughes JP; Baseman JG; Bedford T; Lindquist S<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36596565\">Sentinel Surveillance System Implementation and Evaluation for SARS-CoV-2 Genomic Data, Washington, USA, 2020-2021.<\/a><\/span> &nbsp<span class = \"ip-journal\">Emerg Infect Dis<\/span> <span class = \"ip-vol\">29(2):242-251<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36516082\" data-year=\"2023\"><span class = \"ip-authors\"> Ujjani C; Gooley TA; Spurgeon SE; Stephens DM; Lai C; Broome CM; O'Brien S; Zhu H; Laing KJ; Winter AM; Pongas G; Greninger AL; Koelle DM; Siddiqi T; Davids MS; Rogers KA; Danilov AV; Sperling A; Tu B; Sorensen T; Launchbury K; Burrow CJ; Quezada G; Hill JA; Shadman M; Thompson PA<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36516082\">Diminished humoral and cellular responses to SARS-CoV-2 vaccines in patients with chronic lymphocytic leukemia.<\/a><\/span> &nbsp<span class = \"ip-journal\">Blood Adv<\/span> <span class = \"ip-vol\">7(17):4728-4737<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36385536\" data-year=\"2023\"><span class = \"ip-authors\"> Graf SA; Lynch RC; Ujjani CS; Gooley TA; Rasmussen H; Coffey DG; Cowan AJ; Smith SD; Shadman M; Warren EH; Libby EN; Greninger AL; Fromm JR; Gopal AK<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36385536\">Efficacy, safety, and molecular response predictors of oral ixazomib and short-course rituximab in untreated iNHL.<\/a><\/span> &nbsp<span class = \"ip-journal\">Blood Adv<\/span> <span class = \"ip-vol\">7(5):687-696<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37099295\" data-year=\"2023\"><span class = \"ip-authors\"> Bender Ignacio RA; Chew KW; Moser C; Currier JS; Eron JJ; Javan AC; Giganti MJ; Aga E; Gibbs M; Tchouakam Kouekam H; Johnsson E; Esser MT; Hoover K; Neytman G; Newell M; Daar ES; Fischer W; Fletcher CV; Li JZ; Greninger AL; Coombs RW; Hughes MD; Smith D; Wohl DA<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37099295\">Safety and Efficacy of Combined Tixagevimab and Cilgavimab Administered Intramuscularly or Intravenously in Nonhospitalized Patients With COVID-19: 2 Randomized Clinical Trials.<\/a><\/span> &nbsp<span class = \"ip-journal\">JAMA Netw Open<\/span> <span class = \"ip-vol\">6(4):e2310039<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36094846\" data-year=\"2023\"><span class = \"ip-authors\"> Gonzalez MA; Bhatti AM; Fitzpatrick K; Boonyaratanakornkit J; Huang ML; Campbell VL; Hecht J; Ibrahimi S; Wanner SN; Green DJ; Maloney DG; Gauthier J; Cowan AJ; Greninger AL; Krantz EM; Koelle DM; Hill JA<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36094846\">Humoral and cellular responses to SARS-CoV-2 vaccines before and after chimeric antigen receptor-modified T-cell therapy.<\/a><\/span> &nbsp<span class = \"ip-journal\">Blood Adv<\/span> <span class = \"ip-vol\">7(9):1849-1853<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37097146\" data-year=\"2023\"><span class = \"ip-authors\"> Tu YP; Green C; Hao L; Greninger AL; Morton JF; Sights HA; Gale M Jr; Drain PK<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37097146\">COVID-19 Antigen Results Correlate with the Quantity of Replication-Competent SARS-CoV-2 in a Cross-Sectional Study of Ambulatory Adults during the Delta Wave.<\/a><\/span> &nbsp<span class = \"ip-journal\">Microbiol Spectr<\/span> <span class = \"ip-vol\">11(3):e0006423<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37162835\" data-year=\"2023\"><span class = \"ip-authors\"> Despres HW; Mills MG; Schmidt MM; Gov J; Perez Y; Jindrich M; Crawford AML; Kohl WT; Rosenblatt E; Kubinski HC; Simmons BC; Nippes MC; Goldenberg AJ; Murtha KE; Nicoloro S; Harris MJ; Feeley AC; Gelinas TK; Cronin MK; Frederick RS; Thomas M; Johnson ME; Murphy J; Lenzini EB; Carr PA Jr; Berger DH; Mehta SP; Floreani CJ; Koval AC; Young AL; Fish JH; Wallace J; Chaney E; Ushay G; Ross RS; Vostal EM; Thisner MC; Gonet KE; Deane OC; Pelletiere KR; Rockafeller VC; Waterman M; Barry TW; Goering CC; Shipman SD; Shiers AC; Reilly CE; Duff AM; Shirley DJ; Jerome KR; P\u00e9rez-Osorio AC; Greninger AL; Fortin N; Mosher BA; Bruce EA<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37162835\">Surveillance of Vermont wildlife in 2021-2022 reveals no detected SARS-CoV-2 viral RNA.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37099299\" data-year=\"2023\"><span class = \"ip-authors\"> \u00c1\u00f1ez G; Dunkle LM; Gay CL; Kotloff KL; Adelglass JM; Essink B; Campbell JD; Cloney-Clark S; Zhu M; Plested JS; Roychoudhury P; Greninger AL; Patel N; McGarry A; Woo W; Cho I; Glenn GM; Dubovsky F<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37099299\">Safety, Immunogenicity, and Efficacy of the NVX-CoV2373 COVID-19 Vaccine in Adolescents: A Randomized Clinical Trial.<\/a><\/span> &nbsp<span class = \"ip-journal\">JAMA Netw Open<\/span> <span class = \"ip-vol\">6(4):e239135<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37650235\" data-year=\"2023\"><span class = \"ip-authors\"> Moser CB; Chew KW; Giganti MJ; Li JZ; Aga E; Ritz J; Greninger AL; Javan AC; Bender Ignacio R; Daar ES; Wohl DA; Currier JS; Eron JJ; Smith DM; Hughes MD<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37650235\">Statistical Challenges When Analyzing SARS-CoV-2 RNA Measurements Below the Assay Limit of Quantification in COVID-19 Clinical Trials.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">228(Suppl 2):S101-S110<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"38168237\" data-year=\"2023\"><span class = \"ip-authors\"> Welsh FC; Eguia RT; Lee JM; Haddox HK; Galloway J; Chau NVV; Loes AN; Huddleston J; Yu TC; Le MQ; Nhat NTD; Thanh NTL; Greninger AL; Chu HY; Englund JA; Bedford T; Matsen FA 4th; Boni MF; Bloom JD<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38168237\">Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"38128542\" data-year=\"2023\"><span class = \"ip-authors\"> LaCourse SM; Wetzler EA; Aurelio MC; Escudero JN; Selke SS; Greninger AL; Goecker EA; Barnes SR; Arnould IS; P\u00e9rez-Osorio AC; Richardson BA; Kachikis A; Englund JA; Drake AL<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38128542\">Hybrid immunity to SARS-CoV-2 during pregnancy provides more durable infant antibody responses compared to natural infection alone.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"38124508\" data-year=\"2023\"><span class = \"ip-authors\"> Dionne JA; Giacani L; Tamhane A; Workowski K; Lieberman NAP; Greninger AL; Perlowski C; Newman L; Hook EW 3rd<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38124508\">Prevalence and Predictors of Oral Treponema pallidum Detection by qPCR in Early Syphilis.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37905070\" data-year=\"2023\"><span class = \"ip-authors\"> Lieber CM; Kang HJ; Aggarwal M; Lieberman NA; Sobolik EB; Yoon JJ; Natchus MG; Cox RM; Greninger AL; Plemper RK<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37905070\">Influenza A virus resistance to 4'-fluorouridine coincides with viral attenuation in vitro and in vivo.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37902331\" data-year=\"2023\"><span class = \"ip-authors\"> Sasidharan A; Selvarangan R; Konrad K; Faron ML; Shakir SM; Hillyard D; McCall RK; McHardy IH; Goldberg DC; Dunn JJ; Greninger AL; Lansang C; Bogh R; Remillard CV<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37902331\">Multi-center clinical evaluation of the Panther Fusion SARS-CoV-2\/Flu A\/B\/RSV assay in nasopharyngeal swab specimens from symptomatic individuals.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">61(11):e0082723<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37827185\" data-year=\"2023\"><span class = \"ip-authors\"> Tantalo LC; Lieberman NAP; P\u00e9rez-Ma\u00f1\u00e1 C; Su\u00f1er C; Vall Mayans M; Ubals M; Gonz\u00e1lez-Beiras C; Rodr\u00edguez-Gasc\u00f3n A; Canut A; Gonz\u00e1lez-Candelas F; Mueller J; Tapia K; Greninger AL; Giacani L; Mitj\u00e0 O<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37827185\">Antimicrobial susceptibility of Treponema pallidum subspecies pallidum: an in-vitro study.<\/a><\/span> &nbsp<span class = \"ip-journal\">Lancet Microbe<\/span> <span class = \"ip-vol\">4(12):e994-e1004<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37757952\" data-year=\"2023\"><span class = \"ip-authors\"> Lewinski MA; Alby K; Babady NE; Butler-Wu SM; Bard JD; Greninger AL; Hanson K; Naccache SN; Newton D; Temple-Smolkin RL; Nolte F<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37757952\">Exploring the Utility of Multiplex Infectious Disease Panel Testing for Diagnosis of Infection in Different Body Sites: A Joint Report of the Association for Molecular Pathology, American Society for Microbiology, Infectious Diseases Society of America, and Pan American Society for Clinical Virology.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Mol Diagn<\/span> <span class = \"ip-vol\">25(12):857-875<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37728336\" data-year=\"2023\"><span class = \"ip-authors\"> Rao A; Westbrook A; Bassit L; Parsons R; Fitts E; Greenleaf M; McLendon K; Sullivan JA; O'Sick W; Baugh T; Bowers HB; Frank F; Wang E; Le M; Frediani J; Roychoudhury P; Greninger AL; Jerris R; Pollock NR; Ortlund EA; Roback JD; Lam WA; Piantadosi A<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37728336\">Sensitivity of rapid antigen tests against SARS-CoV-2 Omicron and Delta variants.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">61(10):e0013823<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37674004\" data-year=\"2023\"><span class = \"ip-authors\"> Despres HW; Mills MG; Schmidt MM; Gov J; Perez Y; Jindrich M; Crawford AML; Kohl WT; Rosenblatt E; Kubinski HC; Simmons BC; Nippes MC; Goldenberg AJ; Murtha KE; Nicoloro S; Harris MJ; Feeley AC; Gelinas TK; Cronin MK; Frederick RS; Thomas M; Johnson ME; Murphy J; Lenzini EB; Carr PA Jr; Berger DH; Mehta SP; Floreani CJ; Koval AC; Young AL; Fish JH; Wallace J; Chaney E; Ushay G; Ross RS; Vostal EM; Thisner MC; Gonet KE; Deane OC; Pelletiere KR; Rockafeller VC; Waterman M; Barry TW; Goering CC; Shipman SD; Shiers AC; Reilly CE; Duff AM; Madruga SL; Shirley DJ; Jerome KR; P\u00e9rez-Osorio AC; Greninger AL; Fortin N; Mosher BA; Bruce EA<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37674004\">Surveillance of Vermont wildlife in 2021-2022 reveals no detected SARS-CoV-2 viral RNA.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">13(1):14683<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37961119\" data-year=\"2023\"><span class = \"ip-authors\"> Ramirez SI; Lopez PG; Faraji F; Parikh UM; Heaps A; Ritz J; Moser C; Eron JJ; Wohl DA; Currier JS; Daar ES; Greninger AL; Klekotka P; Grifoni A; Weiskopf D; Sette A; Peters B; Hughes MD; Chew KW; Smith DM; Crotty S<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37961119\">Early antiviral CD4 and CD8 T cell responses are associated with upper respiratory tract clearance of SARS-CoV-2.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37650233\" data-year=\"2023\"><span class = \"ip-authors\"> Ribeiro RM; Choudhary MC; Deo R; Giganti MJ; Moser C; Ritz J; Greninger AL; Regan J; Flynn JP; Wohl DA; Currier JS; Eron JJ; Hughes MD; Smith DM; Chew KW; Daar ES; Perelson AS; Li JZ<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37650233\">Variant-Specific Viral Kinetics in Acute COVID-19.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">228(Suppl 2):S136-S143<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37214809\" data-year=\"2023\"><span class = \"ip-authors\"> Makhsous N; Goya S; Avenda\u00f1o C; Rupp J; Kuypers J; Jerome KR; Boeckh M; Waghmare A; Greninger AL<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37214809\">Within-host rhinovirus evolution in upper and lower respiratory tract highlights capsid variability and mutation-independent compartmentalization.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37615311\" data-year=\"2023\"><span class = \"ip-authors\"> Drake AL; Escudero JN; Aurelio MC; Wetzler EA; Ellington SR; Zapata LB; Galang RR; Snead MC; Yamamoto K; Salerno CC; Richardson BA; Greninger AL; Kachikis AB; Englund JA; LaCourse SM<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37615311\">Severe acute respiratory syndrome coronavirus 2 seroprevalence and longitudinal antibody response following natural infection in pregnancy: A prospective cohort study.<\/a><\/span> &nbsp<span class = \"ip-journal\">Womens Health (Lond)<\/span> <span class = \"ip-vol\">19:17455057231190955<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37586184\" data-year=\"2023\"><span class = \"ip-authors\"> Glasgow HL; Zhu H; Xie H; Kenkel EJ; Lee C; Huang ML; Greninger AL<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37586184\">Genotypic testing improves detection of antiviral resistance in human herpes simplex virus.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">167:105554<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37550333\" data-year=\"2023\"><span class = \"ip-authors\"> Cox RM; Lieber CM; Wolf JD; Karimi A; Lieberman NAP; Sticher ZM; Roychoudhury P; Andrews MK; Krueger RE; Natchus MG; Painter GR; Kolykhalov AA; Greninger AL; Plemper RK<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37550333\">Comparing molnupiravir and nirmatrelvir\/ritonavir efficacy and the effects on SARS-CoV-2 transmission in animal models.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">14(1):4731<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37466213\" data-year=\"2023\"><span class = \"ip-authors\"> Hedskog C; Rodriguez L; Roychoudhury P; Huang ML; Jerome KR; Hao L; Ireton RC; Li J; Perry JK; Han D; Camus G; Greninger AL; Gale M Jr; Porter DP<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37466213\">Viral Resistance Analyses From the Remdesivir Phase 3 Adaptive COVID-19 Treatment Trial-1 (ACTT-1).<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">228(9):1263-1273<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37346095\" data-year=\"2023\"><span class = \"ip-authors\"> McCulloch DJ; Rogers JH; Wang Y; Chow EJ; Link AC; Wolf CR; Uyeki TM; Rolfes MA; Mosites E; Sereewit J; Duchin JS; Sugg NK; Greninger AL; Boeckh MJ; Englund JA; Shendure J; Hughes JP; Starita LM; Roychoudhury P; Chu HY<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37346095\">Respiratory syncytial virus and other respiratory virus infections in residents of homeless shelters - King County, Washington, 2019-2021.<\/a><\/span> &nbsp<span class = \"ip-journal\">Influenza Other Respir Viruses<\/span> <span class = \"ip-vol\">17(6):e13166<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37279602\" data-year=\"2023\"><span class = \"ip-authors\"> Jilg N; Chew KW; Giganti MJ; Daar ES; Wohl DA; Javan AC; Kantor A; Moser C; Coombs RW; Neytman G; Hoover K; Jana A; Hart PA; Greninger AL; Szurgot B; Eron JJ; Currier JS; Hughes MD; Smith DM; Li JZ<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37279602\">One Week of Oral Camostat Versus Placebo in Nonhospitalized Adults With Mild-to-Moderate Coronavirus Disease 2019: A Randomized Controlled Phase 2 Trial.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">77(7):941-949<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37650232\" data-year=\"2023\"><span class = \"ip-authors\"> Li Y; Moser C; Aga E; Currier JS; Wohl DA; Daar ES; Ritz J; Greninger AL; Sieg S; Parikh UM; Coombs RW; Hughes MD; Eron JJ; Smith DM; Chew KW; Li JZ<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37650232\">Immune Status and SARS-CoV-2 Viral Dynamics.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">228(Suppl 2):S111-S116<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37165832\" data-year=\"2023\"><span class = \"ip-authors\"> Aldrete S; Kroft SH; Romeis E; Lieberman NAP; Greninger AL; Giacani L; Kron MA<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37165832\">Whole Genome Sequence of a Treponema pallidum Strain From a Formalin-Fixed, Paraffin-Embedded Fine Needle Aspirate of a Cervical Lymph Node.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sex Transm Dis<\/span> <span class = \"ip-vol\">50(8):550-552<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37183889\" data-year=\"2023\"><span class = \"ip-authors\"> Letendre SL; Chen H; McKhann A; Roa J; Vecchio A; Daar ES; Berzins B; Hunt PW; Marra CM; Campbell TB; Coombs RW; Ma Q; Swaminathan S; Macatangay BJC; Morse GD; Miller T; Rusin D; Greninger AL; Ha B; Alston-Smith B; Robertson K; Paul R; Spudich S<\/span>, <span class = \"ip-date\">2023<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37183889\">Antiretroviral Therapy Intensification for Neurocognitive Impairment in Human Immunodeficiency Virus.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">77(6):866-874<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35169793\" data-year=\"2022\"><span class = \"ip-authors\"> Lieber CM; Cox RM; Sourimant J; Wolf JD; Juergens K; Phung Q; Saindane MT; Natchus MG; Painter GR; Sakamoto K; Greninger AL; Plemper RK<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35169793\">SARS-CoV-2 variant of concern type and biological sex affect efficacy of molnupiravir in dwarf hamster model of severe COVID-19.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35169803\" data-year=\"2022\"><span class = \"ip-authors\"> Hannon WW; Roychoudhury P; Xie H; Shrestha L; Addetia A; Jerome KR; Greninger AL; Bloom JD<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35169803\">Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35301314\" data-year=\"2022\"><span class = \"ip-authors\"> Gandhi S; Klein J; Robertson AJ; Pe\u00f1a-Hern\u00e1ndez MA; Lin MJ; Roychoudhury P; Lu P; Fournier J; Ferguson D; Mohamed Bakhash SAK; Catherine Muenker M; Srivathsan A; Wunder EA Jr; Kerantzas N; Wang W; Lindenbach B; Pyle A; Wilen CB; Ogbuagu O; Greninger AL; Iwasaki A; Schulz WL; Ko AI<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35301314\">De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: a case report.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">13(1):1547<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35439166\" data-year=\"2022\"><span class = \"ip-authors\"> Elyanow R; Snyder TM; Dalai SC; Gittelman RM; Boonyaratanakornkit J; Wald A; Selke S; Wener MH; Morishima C; Greninger AL; Gale M Jr; Hsiang TY; Jing L; Holbrook MR; Kaplan IM; Zahid HJ; May DH; Carlson JM; Baldo L; Manley T; Robins HS; Koelle DM<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35439166\">T cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibodies and disease severity.<\/a><\/span> &nbsp<span class = \"ip-journal\">JCI Insight<\/span> <span class = \"ip-vol\">7<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35341324\" data-year=\"2022\"><span class = \"ip-authors\"> Laitman AM; Lieberman JA; Hoffman NG; Roychoudhury P; Mathias PC; Greninger AL<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35341324\">The SARS-CoV-2 Omicron Variant Does Not Have Higher Nasal Viral Loads Compared to the Delta Variant in Symptomatic and Asymptomatic Individuals.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">60(4):e0013922<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35355993\" data-year=\"2022\"><span class = \"ip-authors\"> Wu X; Roberto JB; Knupp A; Greninger AL; Truong CD; Hollingshead N; Kenerson HL; Tuefferd M; Chen A; Koelle DM; Horton H; Jerome KR; Polyak SJ; Yeung RS; Crispe IN<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35355993\">Response of Human Liver Tissue to Innate Immune Stimuli.<\/a><\/span> &nbsp<span class = \"ip-journal\">Front Immunol<\/span> <span class = \"ip-vol\">13:811551<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35393464\" data-year=\"2022\"><span class = \"ip-authors\"> Lin MJ; Rachleff VM; Xie H; Shrestha L; Lieberman NAP; Peddu V; Addetia A; Casto AM; Breit N; Mathias PC; Huang ML; Jerome KR; Greninger AL; Roychoudhury P<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35393464\">Host-pathogen dynamics in longitudinal clinical specimens from patients with COVID-19.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">12(1):5856<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35484405\" data-year=\"2022\"><span class = \"ip-authors\"> Zhang JZ; Yeh HW; Walls AC; Wicky BIM; Sprouse KR; VanBlargan LA; Treger R; Quijano-Rubio A; Pham MN; Kraft JC; Haydon IC; Yang W; DeWitt M; Bowen JE; Chow CM; Carter L; Ravichandran R; Wener MH; Stewart L; Veesler D; Diamond MS; Greninger AL; Koelle DM; Baker D<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35484405\">Thermodynamically coupled biosensors for detecting neutralizing antibodies against SARS-CoV-2 variants.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Biotechnol<\/span> <span class = \"ip-vol\">40(9):1336-1340<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35502920\" data-year=\"2022\"><span class = \"ip-authors\"> Roychoudhury P; Luo S; Hayashibara K; Hajian P; Mills MG; Lozach J; Cassens T; Wendm ST; Arnould I; Becker D; Wesselman T; Davis-Turak J; Creager R; Lai E; Jerome KR; Basler T; Dei Rossi A; Lee W; Greninger AL<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35502920\">Identification of Omicron-Delta Coinfections Using PCR-Based Genotyping.<\/a><\/span> &nbsp<span class = \"ip-journal\">Microbiol Spectr<\/span> <span class = \"ip-vol\">10(3):e0060522<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35569878\" data-year=\"2022\"><span class = \"ip-authors\"> Phung Q; Lin MJ; Xie H; Greninger AL<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35569878\">Fragment Size-Based Enrichment of Viral Sequences in Plasma Cell-Free DNA.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Mol Diagn<\/span> <span class = \"ip-vol\">24(5):476-484<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35152299\" data-year=\"2022\"><span class = \"ip-authors\"> Bershteyn A; Dahl AM; Dong TQ; Deming ME; Celum CL; Chu HY; Kottkamp AC; Greninger AL; Hoffman RM; Jerome KR; Johnston CM; Kissinger PJ; Landovitz RJ; Laufer MK; Luk A; Neuzil KM; Paasche-Orlow MK; Pitts RA; Schwartz MD; Stankiewicz Karita HC; Thorpe LE; Wald A; Zheng CY; Wener MH; Barnabas RV; Brown ER<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35152299\">Self-Assessed Severity as a Determinant of Coronavirus Disease 2019 Symptom Specificity: A Longitudinal Cohort Study.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">75(1):e1180-e1183<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35058348\" data-year=\"2022\"><span class = \"ip-authors\"> Despres HW; Mills MG; Shirley DJ; Schmidt MM; Huang ML; Roychoudhury P; Jerome KR; Greninger AL; Bruce EA<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35058348\">Measuring infectious SARS-CoV-2 in clinical samples reveals a higher viral titer:RNA ratio for Delta and Epsilon vs. Alpha variants.<\/a><\/span> &nbsp<span class = \"ip-journal\">Proc Natl Acad Sci U S A<\/span> <span class = \"ip-vol\">119<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35150571\" data-year=\"2022\"><span class = \"ip-authors\"> Deming ME; Dong TQ; Agrawal V; Mills MG; Huang MLW; Greninger AL; Jerome KR; Wener MH; Paasche-Orlow MK; Kissinger P; Luk A; Hoffman RM; Stewart J; Kottkamp AC; Bershteyn A; Chu HY; Stankiewicz Karita HC; Johnston CM; Wald A; Barnabas R; Brown ER; Neuzil KM<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35150571\">Detection and Kinetics of Subgenomic Severe Acute Respiratory Syndrome Coronavirus 2 RNA Viral Load in Longitudinal Diagnostic RNA-Positive Samples.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">226(5):788-796<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35149246\" data-year=\"2022\"><span class = \"ip-authors\"> Monta\u00f1o MA; Bemer MJ; Heller KB; Meisner A; Marfatia Z; Rechkina EA; Padgett LR; Ahls CL; Rains D; Hao L; Hsiang TY; Cangelosi GA; Greninger AL; Cantera JL; Golden A; Peck RB; Boyle DS; Gale M Jr; Drain PK<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35149246\">Performance of anterior nares and tongue swabs for nucleic acid, Nucleocapsid, and Spike antigen testing for detecting SARS-CoV-2 against nasopharyngeal PCR and viral culture.<\/a><\/span> &nbsp<span class = \"ip-journal\">Int J Infect Dis<\/span> <span class = \"ip-vol\">117:287-294<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35115840\" data-year=\"2022\"><span class = \"ip-authors\"> Stalter RM; Atluri V; Xia F; Thomas KK; Lan KF; Greninger AL; Patel RC<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35115840\">Elucidating Pathways Mediating the Relationship Between Male Sex and COVID-19 Severity.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Epidemiol<\/span> <span class = \"ip-vol\">14:115-125<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35080423\" data-year=\"2022\"><span class = \"ip-authors\"> Wong TY; Horspool AM; Russ BP; Ye C; Lee KS; Winters MT; Bevere JR; Miller OA; Rader NA; Cooper M; Kieffer T; Sourimant J; Greninger AL; Plemper RK; Denvir J; Cyphert HA; Barbier M; Torrelles JB; Martinez I; Martinez-Sobrido L; Damron FH<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35080423\">Evaluating Antibody Mediated Protection against Alpha, Beta, and Delta SARS-CoV-2 Variants of Concern in K18-hACE2 Transgenic Mice.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">96(6):e0218421<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35006245\" data-year=\"2022\"><span class = \"ip-authors\"> Stankiewicz Karita HC; Dong TQ; Johnston C; Neuzil KM; Paasche-Orlow MK; Kissinger PJ; Bershteyn A; Thorpe LE; Deming M; Kottkamp A; Laufer M; Landovitz RJ; Luk A; Hoffman R; Roychoudhury P; Magaret CA; Greninger AL; Huang ML; Jerome KR; Wener M; Celum C; Chu HY; Baeten JM; Wald A; Barnabas RV; Brown ER<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35006245\">Trajectory of Viral RNA Load Among Persons With Incident SARS-CoV-2 G614 Infection (Wuhan Strain) in Association With COVID-19 Symptom Onset and Severity.<\/a><\/span> &nbsp<span class = \"ip-journal\">JAMA Netw Open<\/span> <span class = \"ip-vol\">5(1):e2142796<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34910859\" data-year=\"2022\"><span class = \"ip-authors\"> Dunkle LM; Kotloff KL; Gay CL; \u00c1\u00f1ez G; Adelglass JM; Barrat Hern\u00e1ndez AQ; Harper WL; Duncanson DM; McArthur MA; Florescu DF; McClelland RS; Garcia-Fragoso V; Riesenberg RA; Musante DB; Fried DL; Safirstein BE; McKenzie M; Jeanfreau RJ; Kingsley JK; Henderson JA; Lane DC; Ru\u00edz-Palacios GM; Corey L; Neuzil KM; Coombs RW; Greninger AL; Hutter J; Ake JA; Smith K; Woo W; Cho I; Glenn GM; Dubovsky F<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34910859\">Efficacy and Safety of NVX-CoV2373 in Adults in the United States and Mexico.<\/a><\/span> &nbsp<span class = \"ip-journal\">N Engl J Med<\/span> <span class = \"ip-vol\">386(6):531-543<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34862752\" data-year=\"2022\"><span class = \"ip-authors\"> Bruce EA; Mills MG; Sampoleo R; Perchetti GA; Huang ML; Despres HW; Schmidt MM; Roychoudhury P; Shirley DJ; Jerome KR; Greninger AL; Botten JW<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34862752\">Predicting infectivity: comparing four PCR-based assays to detect culturable SARS-CoV-2 in clinical samples.<\/a><\/span> &nbsp<span class = \"ip-journal\">EMBO Mol Med<\/span> <span class = \"ip-vol\">14(2):e15290<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35632735\" data-year=\"2022\"><span class = \"ip-authors\"> Juergens KB; Huckabee J; Greninger AL<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35632735\">Two Novel Iflaviruses Discovered in Bat Samples in Washington State.<\/a><\/span> &nbsp<span class = \"ip-journal\">Viruses<\/span> <span class = \"ip-vol\">14<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34807468\" data-year=\"2022\"><span class = \"ip-authors\"> Ujjani C; Greninger AL; Shadman M; Hill JA; Lynch RC; Warren EH; Gopal AK<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34807468\">Heterologous SARS-CoV-2 vaccinations in patients with B-cell lymphoid malignancies.<\/a><\/span> &nbsp<span class = \"ip-journal\">Am J Hematol<\/span> <span class = \"ip-vol\">97(2):E67-E69<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34731234\" data-year=\"2022\"><span class = \"ip-authors\"> Greninger AL; Dien Bard J; Colgrove RC; Graf EH; Hanson KE; Hayden MK; Humphries RM; Lowe CF; Miller MB; Pillai DR; Rhoads DD; Yao JD; Lee FM<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34731234\">Clinical and Infection Prevention Applications of Severe Acute Respiratory Syndrome Coronavirus 2 Genotyping: An Infectious Diseases Society of America\/American Society for Microbiology Consensus Review Document.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">74(8):1496-1502<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34731022\" data-year=\"2022\"><span class = \"ip-authors\"> Greninger AL; Dien Bard J; Colgrove RC; Graf EH; Hanson KE; Hayden MK; Humphries RM; Lowe CF; Miller MB; Pillai DR; Rhoads DD; Yao JD; Lee FM<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34731022\">Clinical and Infection Prevention Applications of Severe Acute Respiratory Syndrome Coronavirus 2 Genotyping: an Infectious Diseases Society of America\/American Society for Microbiology Consensus Review Document.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">60(1):e0165921<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34166484\" data-year=\"2022\"><span class = \"ip-authors\"> McEwen AE; Cohen S; Bryson-Cahn C; Liu C; Pergam SA; Lynch J; Schippers A; Strand K; Whimbey E; Mani NS; Zelikoff AJ; Makarewicz VA; Brown ER; Bakhash SAM; Baker NR; Castor J; Livingston RJ; Huang ML; Jerome KR; Greninger AL; Roychoudhury P<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34166484\">Variants of Concern Are Overrepresented Among Postvaccination Breakthrough Infections of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Washington State.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">74(6):1089-1092<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32710762\" data-year=\"2022\"><span class = \"ip-authors\"> Waghmare A; Krantz EM; Baral S; Vasquez E; Loeffelholz T; Chung EL; Pandey U; Kuypers J; Duke ER; Jerome KR; Greninger AL; Reeves DB; Hladik F; Cardozo-Ojeda EF; Boeckh M; Schiffer JT<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32710762\">Reliability of Self-Sampling for Accurate Assessment of Respiratory Virus Viral and Immunologic Kinetics.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">226(2):278-286<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36366490\" data-year=\"2022\"><span class = \"ip-authors\"> Sereewit J; Lieberman NAP; Xie H; Bakhash SAKM; Nunley BE; Chung B; Mills MG; Roychoudhury P; Greninger AL<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36366490\">ORF-Interrupting Mutations in Monkeypox Virus Genomes from Washington and Ohio, 2022.<\/a><\/span> &nbsp<span class = \"ip-journal\">Viruses<\/span> <span class = \"ip-vol\">14<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35632815\" data-year=\"2022\"><span class = \"ip-authors\"> Avetyan D; Hakobyan S; Nikoghosyan M; Ghukasyan L; Khachatryan G; Sirunyan T; Muradyan N; Zakharyan R; Chavushyan A; Hayrapetyan V; Hovhannisyan A; Mohamed Bakhash SA; Jerome KR; Roychoudhury P; Greninger AL; Niazyan L; Davidyants M; Melik-Andreasyan G; Sargsyan S; Nersisyan L; Arakelyan A<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35632815\">Molecular Analysis of SARS-CoV-2 Lineages in Armenia.<\/a><\/span> &nbsp<span class = \"ip-journal\">Viruses<\/span> <span class = \"ip-vol\">14<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36005759\" data-year=\"2022\"><span class = \"ip-authors\"> Heldman MR; Wight DJ; Aiewsakun P; Aswad A; Fang M; Roychoudhury P; Stevens-Ayers T; Jerome KR; Zerr DM; Greninger AL; Kaufer BB; Boeckh M; Hill JA<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36005759\">Chromosome-Specific Human Herpesvirus 6 Integration and Hematologic Malignancies.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">96(17):e0093722<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36679852\" data-year=\"2022\"><span class = \"ip-authors\"> Goldman JD; Wang K; R\u00f6ltgen K; Nielsen SCA; Roach JC; Naccache SN; Yang F; Wirz OF; Yost KE; Lee JY; Chun K; Wrin T; Petropoulos CJ; Lee I; Fallen S; Manner PM; Wallick JA; Algren HA; Murray KM; Hadlock J; Chen D; Dai CL; Yuan D; Su Y; Jeharajah J; Berrington WR; Pappas GP; Nyatsatsang ST; Greninger AL; Satpathy AT; Pauk JS; Boyd SD; Heath JR<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36679852\">Reinfection with SARS-CoV-2 and Waning Humoral Immunity: A Case Report.<\/a><\/span> &nbsp<span class = \"ip-journal\">Vaccines (Basel)<\/span> <span class = \"ip-vol\">11<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36561171\" data-year=\"2022\"><span class = \"ip-authors\"> Paredes MI; Perofsky AC; Frisbie L; Moncla LH; Roychoudhury P; Xie H; Mohamed Bakhash SA; Kong K; Arnould I; Nguyen TV; Wendm ST; Hajian P; Ellis S; Mathias PC; Greninger AL; Starita LM; Frazar CD; Ryke E; Zhong W; Gamboa L; Threlkeld M; Lee J; Stone J; McDermot E; Truong M; Shendure J; Oltean HN; Viboud C; Chu H; M\u00fcller NF; Bedford T<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36561171\">Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36451893\" data-year=\"2022\"><span class = \"ip-authors\"> Cox RM; Lieber CM; Wolf JD; Karimi A; Lieberman NAP; Sticher ZM; Roychoudhury P; Andrews MK; Krueger RE; Natchus MG; Painter GR; Kolykhalov AA; Greninger AL; Plemper RK<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36451893\">Paxlovid-like nirmatrelvir\/ritonavir fails to block SARS-CoV-2 transmission in ferrets.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36409134\" data-year=\"2022\"><span class = \"ip-authors\"> Lieberman NAP; Mathias PC; Bradley BT; Greninger AL<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36409134\">Clinical Performance and Trends during the First Two Months of Monkeypox Virus PCR Testing at Two United States Reference Labs.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">60(12):e0137122<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35677066\" data-year=\"2022\"><span class = \"ip-authors\"> Reynard O; Gonzalez C; Dumont C; Iampietro M; Ferren M; Le Guellec S; Laurie L; Mathieu C; Carpentier G; Roseau G; Bovier FT; Zhu Y; Le Pennec D; Montharu J; Addetia A; Greninger AL; Alabi CA; Moscona A; Vecellio L; Porotto M; Horvat B<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35677066\">Nebulized fusion inhibitory peptide protects cynomolgus macaques from measles virus infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">Res Sq<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36307480\" data-year=\"2022\"><span class = \"ip-authors\"> Reynard O; 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Li JZ<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36289399\">Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Microbiol<\/span> <span class = \"ip-vol\">7(11):1906-1917<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36204625\" data-year=\"2022\"><span class = \"ip-authors\"> Lieberman NAP; Armstrong TD; Chung B; Pfalmer D; Hennelly CM; Haynes A; Romeis E; Wang QQ; Zhang RL; Kou CX; Ciccarese G; Conte ID; Cusini M; Drago F; Nakayama SI; Lee K; Ohnishi M; Konda KA; Vargas SK; Eguiluz M; Caceres CF; Klausner JD; Mitja O; Rompalo A; Mulcahy F; Hook EW 3rd; Hoffman IF; Matoga MM; Zheng H; Yang B; Lopez-Medina E; Ramirez LG; Radolf JD; Hawley KL; Salazar JC; Lukehart SA; Se\u00f1a AC; Parr JB; Giacani L; Greninger AL<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36204625\">High-throughput nanopore sequencing of Treponema pallidum tandem repeat genes arp and tp0470 reveals clade-specific patterns and recapitulates global whole genome phylogeny.<\/a><\/span> &nbsp<span class = \"ip-journal\">Front Microbiol<\/span> <span class = \"ip-vol\">13:1007056<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36172135\" data-year=\"2022\"><span class = \"ip-authors\"> \u00c1\u00f1ez G; Dunkle LM; Gay CL; Kotloff KL; Adelglass JM; Essink B; Campbell JD; Cloney-Clark S; Zhu M; Plested JS; Roychoudhury P; Greninger AL; Patel N; McGarry A; Woo W; Cho I; Glenn GM; Dubovsky F<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36172135\">Safety, Immunogenicity and Efficacy of NVX-CoV2373 in Adolescents in PREVENT-19: A Randomized, Phase 3 Trial.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36150508\" data-year=\"2022\"><span class = \"ip-authors\"> Chow EJ; Casto AM; Sampoleo R; Mills MG; Han PD; Xie H; Pfau B; Nguyen TV; Sereewit J; Rogers JH; Cox SN; Rolfes MA; Ogokeh C; Mosites E; Uyeki TM; Greninger AL; Hughes JP; Shim MM; Sugg N; Duchin JS; Starita LM; Englund JA; Roychoudhury P; Chu HY<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36150508\">Human Parainfluenza Virus in Homeless Shelters before and during the COVID-19 Pandemic, Washington, USA.<\/a><\/span> &nbsp<span class = \"ip-journal\">Emerg Infect Dis<\/span> <span class = \"ip-vol\">28(11):2343-2347<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"36113538\" data-year=\"2022\"><span class = \"ip-authors\"> Hardt K; 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Cirulli ET; Schiabor Barrett K; Washington NL; Belda-Ferre P; Jacobs S; Sandoval E; Becker D; Lu JT; Isaksson M; Lee W; Luo S<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36332633\">Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination.<\/a><\/span> &nbsp<span class = \"ip-journal\">Med<\/span> <span class = \"ip-vol\">3(12):848-859.e4<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35982660\" data-year=\"2022\"><span class = \"ip-authors\"> Deo R; Choudhary MC; Moser C; Ritz J; Daar ES; Wohl DA; Greninger AL; Eron JJ; Currier JS; Hughes MD; Smith DM; Chew KW; Li JZ<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35982660\">Viral and Symptom Rebound in Untreated COVID-19 Infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35862190\" data-year=\"2022\"><span class = \"ip-authors\"> Chang A; Sholukh AM; Wieland A; Jaye DL; Carrington M; Huang ML; Xie H; Jerome KR; Roychoudhury P; Greninger AL; Koff JL; Cohen JB; Koelle DM; Corey L; Flowers CR; Ahmed R<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35862190\">Herpes simplex virus lymphadenitis is associated with tumor reduction in a patient with chronic lymphocytic leukemia.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Invest<\/span> <span class = \"ip-vol\">132<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35749582\" data-year=\"2022\"><span class = \"ip-authors\"> Chow EJ; Casto AM; Roychoudhury P; Han PD; Xie H; Pfau B; Nguyen TV; Sereewit J; Rogers JH; Cox SN; Wolf CR; Rolfes MA; Mosites E; Uyeki TM; Greninger AL; Hughes JP; Shim MM; Sugg N; Duchin JS; Starita LM; Englund JA; Chu HY<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35749582\">The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">226(Suppl 3):S304-S314<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35766514\" data-year=\"2022\"><span class = \"ip-authors\"> Lai E; Kennedy EB; Lozach J; Hayashibara K; Davis-Turak J; Becker D; Brzoska P; Cassens T; Diamond E; Gandhi M; Greninger AL; Hajian P; Leonetti NA; Nguyen JM; O'Donovan KMC; Peck T; Ramirez JM 3rd; Roychoudhury P; Sandoval E; Wesselman C; Wesselman T; White S; Williams S; Wong D; Yu Y; Creager RS<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35766514\">A Method for Variant Agnostic Detection of SARS-CoV-2, Rapid Monitoring of Circulating Variants, and Early Detection of Emergent Variants Such as Omicron.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">60(7):e0034222<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35779343\" data-year=\"2022\"><span class = \"ip-authors\"> Mills MG; Hajian P; Bakhash SM; Xie H; Mantzke D; Zhu H; Perchetti GA; Huang ML; Pepper G; Jerome KR; Roychoudhury P; Greninger AL<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35779343\">Rapid and accurate identification of SARS-CoV-2 Omicron variants using droplet digital PCR (RT-ddPCR).<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">154:105218<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35799885\" data-year=\"2022\"><span class = \"ip-authors\"> Hannon WW; Roychoudhury P; Xie H; Shrestha L; Addetia A; Jerome KR; Greninger AL; Bloom JD<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35799885\">Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat.<\/a><\/span> &nbsp<span class = \"ip-journal\">Virus Evol<\/span> <span class = \"ip-vol\">8(2):veac052<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35793677\" data-year=\"2022\"><span class = \"ip-authors\"> Boucau J; Chew KW; Choudhary MC; Deo R; Regan J; Flynn JP; Crain CR; Hughes MD; Ritz J; Moser C; Dragavon JA; Javan AC; Nirula A; Klekotka P; Greninger AL; Coombs RW; Fischer WA 2nd; Daar ES; Wohl DA; Eron JJ; Currier JS; Smith DM; Li JZ; Barczak AK<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35793677\">Monoclonal antibody treatment drives rapid culture conversion in SARS-CoV-2 infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">Cell Rep Med<\/span> <span class = \"ip-vol\">3(7):100678<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"37552740\" data-year=\"2022\"><span class = \"ip-authors\"> Nguyen Quoc B; Saingam P; RedCorn R; Carter JA; Jain T; Candry P; Gattuso M; Huang MW; Greninger AL; Meschke JS; Bryan A; Winkler MKH<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37552740\">Case Study: Impact of Diurnal Variations and Stormwater Dilution on SARS-CoV-2 RNA Signal Intensity at Neighborhood Scale Wastewater Pumping Stations.<\/a><\/span> &nbsp<span class = \"ip-journal\">ACS ES T Water<\/span> <span class = \"ip-vol\">2(11):1964-1975<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35863699\" data-year=\"2022\"><span class = \"ip-authors\"> Shrestha L; Lin MJ; Xie H; Mills MG; Mohamed Bakhash SA; Gaur VP; Livingston RJ; Castor J; Bruce EA; Botten JW; Huang ML; Jerome KR; Greninger AL; Roychoudhury P<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35863699\">Clinical Performance Characteristics of the Swift Normalase Amplicon Panel for Sensitive Recovery of Severe Acute Respiratory Syndrome Coronavirus 2 Genomes.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Mol Diagn<\/span> <span class = \"ip-vol\">24(9):963-976<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35906230\" data-year=\"2022\"><span class = \"ip-authors\"> Lieber CM; Cox RM; Sourimant J; Wolf JD; Juergens K; Phung Q; Saindane MT; Smith MK; Sticher ZM; Kalykhalov AA; Natchus MG; Painter GR; Sakamoto K; Greninger AL; Plemper RK<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35906230\">SARS-CoV-2 VOC type and biological sex affect molnupiravir efficacy in severe COVID-19 dwarf hamster model.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">13(1):4416<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35932641\" data-year=\"2022\"><span class = \"ip-authors\"> Hawman DW; Meade-White K; Clancy C; Archer J; Hinkley T; Leventhal SS; Rao D; Stamper A; Lewis M; Rosenke R; Krieger K; Randall S; Khandhar AP; Hao L; Hsiang TY; Greninger AL; Gale M Jr; Berglund P; Fuller DH; Rosenke K; Feldmann H; Erasmus JH<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35932641\">Replicating RNA platform enables rapid response to the SARS-CoV-2 Omicron variant and elicits enhanced protection in na\u00efve hamsters compared to ancestral vaccine.<\/a><\/span> &nbsp<span class = \"ip-journal\">EBioMedicine<\/span> <span class = \"ip-vol\">83:104196<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35940869\" data-year=\"2022\"><span class = \"ip-authors\"> Kumbhakar R; Neradilek M; Barnabas RV; Stewart J; Stankiewicz Karita HC; Landovitz RJ; Kissinger PJ; Jerome KR; Paasche-Orlow MK; Bershteyn A; Chu HY; Neuzil KM; Greninger AL; Luk A; Wald A; Brown ER; Johnston C<\/span>, <span class = \"ip-date\">2022<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35940869\">Using time-weighted average change from baseline of SARS-CoV-2 viral load to assess impact of hydroxychloroquine as postexposure prophylaxis and early treatment for COVID-19.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Med Virol<\/span> <span class = \"ip-vol\">94(12):6091-6096<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33972455\" data-year=\"2021\"><span class = \"ip-authors\"> Chandler CM; Bourassa L; Mathias PC; Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33972455\">Estimating the False-Positive Rate of Highly Automated SARS-CoV-2 Nucleic Acid Amplification Testing.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">59(8):e0108021<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33941621\" data-year=\"2021\"><span class = \"ip-authors\"> M\u00fcller NF; Wagner C; Frazar CD; Roychoudhury P; Lee J; Moncla LH; Pelle B; Richardson M; Ryke E; Xie H; Shrestha L; Addetia A; Rachleff VM; Lieberman NAP; Huang ML; Gautom R; Melly G; Hiatt B; Dykema P; Adler A; Brandstetter E; Han PD; Fay K; Ilcisin M; Lacombe K; Sibley TR; Truong M; Wolf CR; Boeckh M; Englund JA; Famulare M; Lutz BR; Rieder MJ; Thompson M; Duchin JS; Starita LM; Chu HY; Shendure J; Jerome KR; Lindquist S; Greninger AL; Nickerson DA; Bedford T<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33941621\">Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Transl Med<\/span> <span class = \"ip-vol\">13<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33655268\" data-year=\"2021\"><span class = \"ip-authors\"> Peng B; Zhou W; Pettit RW; Yu P; Matos PG; Greninger AL; McCashin J; Amos CI<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33655268\">Optimal test-assisted quarantine strategies for COVID-19.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33855313\" data-year=\"2021\"><span class = \"ip-authors\"> Tordoff DM; Greninger AL; Roychoudhury P; Shrestha L; Xie H; Jerome KR; Breit N; Huang ML; Famulare M; Herbeck JT<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33855313\">Phylogenetic estimates of SARS-CoV-2 introductions into Washington State.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33849972\" data-year=\"2021\"><span class = \"ip-authors\"> Addetia A; Lieberman NAP; Phung Q; Hsiang TY; Xie H; Roychoudhury P; Shrestha L; Loprieno MA; Huang ML; Gale M Jr; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33849972\">SARS-CoV-2 ORF6 Disrupts Bidirectional Nucleocytoplasmic Transport through Interactions with Rae1 and Nup98.<\/a><\/span> &nbsp<span class = \"ip-journal\">mBio<\/span> <span class = \"ip-vol\">12<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33831132\" data-year=\"2021\"><span class = \"ip-authors\"> Eguia RT; Crawford KHD; Stevens-Ayers T; Kelnhofer-Millevolte L; Greninger AL; Englund JA; Boeckh MJ; Bloom JD<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33831132\">A human coronavirus evolves antigenically to escape antibody immunity.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Pathog<\/span> <span class = \"ip-vol\">17(4):e1009453<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33827948\" data-year=\"2021\"><span class = \"ip-authors\"> Addetia A; Phung Q; Bradley BT; Lin MJ; Zhu H; Xie H; Huang ML; Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33827948\">In Vivo Generation of BK and JC Polyomavirus Defective Viral Genomes in Human Urine Samples Associated with Higher Viral Loads.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">95<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33811225\" data-year=\"2021\"><span class = \"ip-authors\"> Greninger AL; Addetia A; Tao Y; Adler A; Qin X<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33811225\">Inactivation of genes in oxidative respiration and iron acquisition pathways in pediatric clinical isolates of Small colony variant Enterobacteriaceae.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">11(1):7457<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33804667\" data-year=\"2021\"><span class = \"ip-authors\"> Yang S; Jerome KR; Greninger AL; Schiffer JT; Goyal A<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33804667\">Endogenously Produced SARS-CoV-2 Specific IgG Antibodies May Have a Limited Impact on Clearing Nasal Shedding of Virus during Primary Infection in Humans.<\/a><\/span> &nbsp<span class = \"ip-journal\">Viruses<\/span> <span class = \"ip-vol\">13<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33791723\" data-year=\"2021\"><span class = \"ip-authors\"> Elyanow R; Snyder TM; Dalai SC; Gittelman RM; Boonyaratanakornkit J; Wald A; Selke S; Wener MH; Morishima C; Greninger AL; Holbrook MR; Kaplan IM; Zahid HJ; Carlson JM; Baldo L; Manley T; Robins HS; Koelle DM<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33791723\">T-cell receptor sequencing identifies prior SARS-CoV-2 infection and correlates with neutralizing antibody titers and disease severity.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33681731\" data-year=\"2021\"><span class = \"ip-authors\"> Johnston C; Brown ER; Stewart J; Karita HCS; Kissinger PJ; Dwyer J; Hosek S; Oyedele T; Paasche-Orlow MK; Paolino K; Heller KB; Leingang H; Haugen HS; Dong TQ; Bershteyn A; Sridhar AR; Poole J; Noseworthy PA; Ackerman MJ; Morrison S; Greninger AL; Huang ML; Jerome KR; Wener MH; Wald A; Schiffer JT; Celum C; Chu HY; Barnabas RV; Baeten JM<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33681731\">Hydroxychloroquine with or without azithromycin for treatment of early SARS-CoV-2 infection among high-risk outpatient adults: A randomized clinical trial.<\/a><\/span> &nbsp<span class = \"ip-journal\">EClinicalMedicine<\/span> <span class = \"ip-vol\">33:100773<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33497413\" data-year=\"2021\"><span class = \"ip-authors\"> Child SJ; Greninger AL; Geballe AP<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33497413\">Rapid adaptation to human protein kinase R by a unique genomic rearrangement in rhesus cytomegalovirus.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Pathog<\/span> <span class = \"ip-vol\">17(1):e1009088<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33637820\" data-year=\"2021\"><span class = \"ip-authors\"> Nakamichi K; Shen JZ; Lee CS; Lee A; Roberts EA; Simonson PD; Roychoudhury P; Andriesen J; Randhawa AK; Mathias PC; Greninger AL; Jerome KR; Van Gelder RN<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33637820\">Hospitalization and mortality associated with SARS-CoV-2 viral clades in COVID-19.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">11(1):4802<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33619344\" data-year=\"2021\"><span class = \"ip-authors\"> Phan IQ; Subramanian S; Kim D; Murphy M; Pettie D; Carter L; Anishchenko I; Barrett LK; Craig J; Tillery L; Shek R; Harrington WE; Koelle DM; Wald A; Veesler D; King N; Boonyaratanakornkit J; Isoherranen N; Greninger AL; Jerome KR; Chu H; Staker B; Stewart L; Myler PJ; Van Voorhis WC<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33619344\">In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">11(1):4290<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33564820\" data-year=\"2021\"><span class = \"ip-authors\"> Bosch DE; Mathias PC; Krumm N; Bryan A; Fang FC; Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33564820\">Elevated White Blood Cell Count Does Not Predict Clostridium difficile Nucleic Acid Testing Results.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">73(4):699-705<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33535236\" data-year=\"2021\"><span class = \"ip-authors\"> Crawford KHD; Dingens AS; Eguia R; Wolf CR; Wilcox N; Logue JK; Shuey K; Casto AM; Fiala B; Wrenn S; Pettie D; King NP; Greninger AL; Chu HY; Bloom JD<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33535236\">Dynamics of Neutralizing Antibody Titers in the Months After Severe Acute Respiratory Syndrome Coronavirus 2 Infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">223(2):197-205<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33501950\" data-year=\"2021\"><span class = \"ip-authors\"> Long DR; Gombar S; Hogan CA; Greninger AL; O'Reilly-Shah V; Bryson-Cahn C; Stevens B; Rustagi A; Jerome KR; Kong CS; Zehnder J; Shah NH; Weiss NS; Pinsky BA; Sunshine JE<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33501950\">Occurrence and Timing of Subsequent Severe Acute Respiratory Syndrome Coronavirus 2 Reverse-transcription Polymerase Chain Reaction Positivity Among Initially Negative Patients.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">72(2):323-326<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32722766\" data-year=\"2021\"><span class = \"ip-authors\"> Aswad A; Aimola G; Wight D; Roychoudhury P; Zimmermann C; Hill J; Lassner D; Xie H; Huang ML; Parrish NF; Schultheiss HP; Venturini C; Lager S; Smith GCS; Charnock-Jones DS; Breuer J; Greninger AL; Kaufer BB<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32722766\">Evolutionary History of Endogenous Human Herpesvirus 6 Reflects Human Migration out of Africa.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Biol Evol<\/span> <span class = \"ip-vol\">38(1):96-107<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33473359\" data-year=\"2021\"><span class = \"ip-authors\"> Stone D; Long KR; Loprieno MA; De Silva Feelixge HS; Kenkel EJ; Liley RM; Rapp S; Roychoudhury P; Nguyen T; Stensland L; Col\u00f3n-Thillet R; Klouser LM; Weber ND; Le C; Wagoner J; Goecker EA; Li AZ; Eichholz K; Corey L; Tyrrell DL; Greninger AL; Huang ML; Polyak SJ; Aubert M; Sagartz JE; Jerome KR<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33473359\">CRISPR-Cas9 gene editing of hepatitis B virus in chronically infected humanized mice.<\/a><\/span> &nbsp<span class = \"ip-journal\">Mol Ther Methods Clin Dev<\/span> <span class = \"ip-vol\">20:258-275<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34023572\" data-year=\"2021\"><span class = \"ip-authors\"> Perchetti GA; Pepper G; Shrestha L; LaTurner K; Yae Kim D; Huang ML; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34023572\">Performance characteristics of the Abbott Alinity m SARS-CoV-2 assay.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">140:104869<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33436756\" data-year=\"2021\"><span class = \"ip-authors\"> Li Y; Gordon E; Shean RC; Idle A; Deng X; Greninger AL; Delwart E<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33436756\">CrAssphage and its bacterial host in cat feces.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">11(1):815<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33310764\" data-year=\"2021\"><span class = \"ip-authors\"> Perchetti GA; Huang ML; Mills MG; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33310764\">Analytical Sensitivity of the Abbott BinaxNOW COVID-19 Ag Card.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">59<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33284679\" data-year=\"2021\"><span class = \"ip-authors\"> Barnabas RV; Brown ER; Bershteyn A; Stankiewicz Karita HC; Johnston C; Thorpe LE; Kottkamp A; Neuzil KM; Laufer MK; Deming M; Paasche-Orlow MK; Kissinger PJ; Luk A; Paolino K; Landovitz RJ; Hoffman R; Schaafsma TT; Krows ML; Thomas KK; Morrison S; Haugen HS; Kidoguchi L; Wener M; Greninger AL; Huang ML; Jerome KR; Wald A; Celum C; Chu HY; Baeten JM<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33284679\">Hydroxychloroquine as Postexposure Prophylaxis to Prevent Severe Acute Respiratory Syndrome Coronavirus 2 Infection : A Randomized Trial.<\/a><\/span> &nbsp<span class = \"ip-journal\">Ann Intern Med<\/span> <span class = \"ip-vol\">174(3):344-352<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32827597\" data-year=\"2021\"><span class = \"ip-authors\"> Corcorran MA; Olin S; Rani G; Nasenbeny K; Constantino-Shor C; Holmes C; Quinnan-Hostein L; Solan W; Snoeyenbos Newman G; Roxby AC; Greninger AL; Jerome KR; Neme S; Lynch JB; Dellit TH; Cohen SA<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32827597\">Prolonged persistence of PCR-detectable virus during an outbreak of SARS-CoV-2 in an inpatient geriatric psychiatry unit in King County, Washington.<\/a><\/span> &nbsp<span class = \"ip-journal\">Am J Infect Control<\/span> <span class = \"ip-vol\">49(3):293-298<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34007030\" data-year=\"2021\"><span class = \"ip-authors\"> Mathieu C; Ferren M; Harder O; Bovier FT; Marcink TC; Predella C; Angius F; Drew-Bear J; Dorrello NV; Greninger AL; Moscona A; Niewiesk S; Horvat B; Porotto M<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34007030\">Single-chain variable fragment antibody constructs neutralize measles virus infection in vitro and in vivo.<\/a><\/span> &nbsp<span class = \"ip-journal\">Cell Mol Immunol<\/span> <span class = \"ip-vol\">18(7):1835-1837<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33320842\" data-year=\"2021\"><span class = \"ip-authors\"> Boonyaratanakornkit J; Morishima C; Selke S; Zamora D; McGuffin S; Shapiro AE; Campbell VL; McClurkan CL; Jing L; Gross R; Liang J; Postnikova E; Mazur S; Lukin VV; Chaudhary A; Das MK; Fink SL; Bryan A; Greninger AL; Jerome KR; Holbrook MR; Gernsheimer TB; Wener MH; Wald A; Koelle DM<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33320842\">Clinical, laboratory, and temporal predictors of neutralizing antibodies against SARS-CoV-2 among COVID-19 convalescent plasma donor candidates.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Invest<\/span> <span class = \"ip-vol\">131<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34061592\" data-year=\"2021\"><span class = \"ip-authors\"> Mathieu C; Bovier FT; Ferren M; Lieberman NAP; Predella C; Lalande A; Peddu V; Lin MJ; Addetia A; Patel A; Outlaw V; Corneo B; Dorrello NV; Briese T; Hardie D; Horvat B; Moscona A; Greninger AL; Porotto M<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34061592\">Molecular Features of the Measles Virus Viral Fusion Complex That Favor Infection and Spread in the Brain.<\/a><\/span> &nbsp<span class = \"ip-journal\">mBio<\/span> <span class = \"ip-vol\">12(3):e0079921<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34580677\" data-year=\"2021\"><span class = \"ip-authors\"> Pettit R; Peng B; Yu P; Matos PG; Greninger AL; McCashin J; Amos CI<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34580677\">Optimized Post-Vaccination Strategies and Preventative Measures for SARS-CoV-2.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35604806\" data-year=\"2021\"><span class = \"ip-authors\"> Mayfield JJ; Chatterjee NA; Noseworthy PA; Poole JE; Ackerman MJ; Stewart J; Kissinger PJ; Dwyer J; Hosek S; Oyedele T; Paasche-Orlow MK; Paolino K; Friedman PA; Waters C; Moreno J; Leingang H; Heller KB; Morrison SA; Krows ML; Barnabas RV; Baeten J; Johnston C; Sridhar AR<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35604806\">Implementation of a fully remote randomized clinical trial with cardiac monitoring.<\/a><\/span> &nbsp<span class = \"ip-journal\">Commun Med (Lond)<\/span> <span class = \"ip-vol\">1:62<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35164568\" data-year=\"2021\"><span class = \"ip-authors\"> Rijsbergen LC; Schmitz KS; Begeman L; Drew-Bear J; Gommers L; Lamers MM; Greninger AL; Haagmans BL; Porotto M; de Swart RL; Moscona A; de Vries RD<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35164568\">Modeling Infection and Tropism of Human Parainfluenza Virus Type 3 in Ferrets.<\/a><\/span> &nbsp<span class = \"ip-journal\">mBio<\/span> <span class = \"ip-vol\">13(1):e0383121<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35018382\" data-year=\"2021\"><span class = \"ip-authors\"> Boucau J; Chew KW; Choudhary M; Deo R; Regan J; Flynn JP; Crain CR; Hughes MD; Ritz J; Moser C; Dragavon JA; Javan AC; Nirula A; Klekotka P; Greninger AL; Coombs RW; Fischer WA 2nd; Daar ES; Wohl DA; Eron JJ; Currier JS; Smith DM; Li JZ; Barczak AK<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35018382\">Monoclonal antibody treatment drives rapid culture conversion in SARS-CoV-2 infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"35013735\" data-year=\"2021\"><span class = \"ip-authors\"> Tordoff DM; Greninger AL; Roychoudhury P; Shrestha L; Xie H; Jerome KR; Breit N; Huang ML; Famulare M; Herbeck JT<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35013735\">Phylogenetic estimates of SARS-CoV-2 introductions into Washington State.<\/a><\/span> &nbsp<span class = \"ip-journal\">Lancet Reg Health Am<\/span> <span class = \"ip-vol\">1:100018<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34951469\" data-year=\"2021\"><span class = \"ip-authors\"> Greninger AL; Zerr DM<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34951469\">NGSocomial Infections: High-Resolution Views of Hospital-Acquired Infections Through Genomic Epidemiology.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Pediatric Infect Dis Soc<\/span> <span class = \"ip-vol\">10(Supplement_4):S88-S95<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34936652\" data-year=\"2021\"><span class = \"ip-authors\"> Lieberman NAP; Lin MJ; Xie H; Shrestha L; Nguyen T; Huang ML; Haynes AM; Romeis E; Wang QQ; Zhang RL; Kou CX; Ciccarese G; Dal Conte I; Cusini M; Drago F; Nakayama SI; Lee K; Ohnishi M; Konda KA; Vargas SK; Eguiluz M; Caceres CF; Klausner JD; Mitj\u00e0 O; Rompalo A; Mulcahy F; Hook EW 3rd; Lukehart SA; Casto AM; Roychoudhury P; DiMaio F; Giacani L; Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34936652\">Treponema pallidum genome sequencing from six continents reveals variability in vaccine candidate genes and dominance of Nichols clade strains in Madagascar.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Negl Trop Dis<\/span> <span class = \"ip-vol\">15(12):e0010063<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34909781\" data-year=\"2021\"><span class = \"ip-authors\"> Gandhi S; Klein J; Robertson A; Pe\u00f1a-Hern\u00e1ndez MA; Lin MJ; Roychoudhury P; Lu P; Fournier J; Ferguson D; Mohamed Bakhash SA; Catherine Muenker M; Srivathsan A; Wunder EA; Kerantzas N; Wang W; Lindenbach B; Pyle A; Wilen CB; Ogbuagu O; Greninger AL; Iwasaki A; Schulz WL; Ko AI<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34909781\">De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: A case report.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34741049\" data-year=\"2021\"><span class = \"ip-authors\"> Cox RM; Wolf JD; Lieber CM; Sourimant J; Lin MJ; Babusis D; DuPont V; Chan J; Barrett KT; Lye D; Kalla R; Chun K; Mackman RL; Ye C; Cihlar T; Martinez-Sobrido L; Greninger AL; Bilello JP; Plemper RK<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34741049\">Oral prodrug of remdesivir parent GS-441524 is efficacious against SARS-CoV-2 in ferrets.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">12(1):6415<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34679489\" data-year=\"2021\"><span class = \"ip-authors\"> Lownik JC; Farrar JS; Way GW; McKay A; Roychoudhury P; Greninger AL; Martin RK<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34679489\">Fast SARS-CoV-2 Variant Detection Using Snapback Primer High-Resolution Melting.<\/a><\/span> &nbsp<span class = \"ip-journal\">Diagnostics (Basel)<\/span> <span class = \"ip-vol\">11<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34609969\" data-year=\"2021\"><span class = \"ip-authors\"> Greninger AL; Rybkina K; Lin MJ; Drew-Bear J; Marcink TC; Shean RC; Makhsous N; Boeckh M; Harder O; Bovier F; Burstein SR; Niewiesk S; Rima BK; Porotto M; Moscona A<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34609969\">Human parainfluenza virus evolution during lung infection of immunocompromised individuals promotes viral persistence.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Invest<\/span> <span class = \"ip-vol\">131<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34608167\" data-year=\"2021\"><span class = \"ip-authors\"> Ferren M; Fav\u00e8de V; Decimo D; Iampietro M; Lieberman NAP; Weickert JL; Pelissier R; Mazelier M; Terrier O; Moscona A; Porotto M; Greninger AL; Messaddeq N; Horvat B; Mathieu C<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34608167\">Hamster organotypic modeling of SARS-CoV-2 lung and brainstem infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">12(1):5809<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34116392\" data-year=\"2021\"><span class = \"ip-authors\"> Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34116392\">Test it earlier, result it faster, makes us stronger: how rapid viral diagnostics enable therapeutic success.<\/a><\/span> &nbsp<span class = \"ip-journal\">Curr Opin Virol<\/span> <span class = \"ip-vol\">49:111-116<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34580674\" data-year=\"2021\"><span class = \"ip-authors\"> Despres HW; Mills MG; Shirley DJ; Schmidt MM; Huang ML; Jerome KR; Greninger AL; Bruce EA<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34580674\">Quantitative measurement of infectious virus in SARS-CoV-2 Alpha, Delta and Epsilon variants reveals higher infectivity (viral titer:RNA ratio) in clinical samples containing the Delta and Epsilon variants.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34242571\" data-year=\"2021\"><span class = \"ip-authors\"> Hill JA; Ujjani CS; Greninger AL; Shadman M; Gopal AK<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34242571\">Immunogenicity of a heterologous COVID-19 vaccine after failed vaccination in a lymphoma patient.<\/a><\/span> &nbsp<span class = \"ip-journal\">Cancer Cell<\/span> <span class = \"ip-vol\">39(8):1037-1038<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34165323\" data-year=\"2021\"><span class = \"ip-authors\"> Bradley BT; Bryan A; Fink SL; Goecker EA; Roychoudhury P; Huang ML; Zhu H; Chaudhary A; Madarampalli B; Lu JYC; Strand K; Whimbey E; Bryson-Cahn C; Schippers A; Mani NS; Pepper G; Jerome KR; Morishima C; Coombs RW; Wener M; Cohen S; Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34165323\">Anti-SARS-CoV-2 Antibody Levels Measured by the AdviseDx SARS-CoV-2 Assay Are Concordant with Previously Available Serologic Assays but Are Not Fully Predictive of Sterilizing Immunity.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">59(9):e0098921<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34170525\" data-year=\"2021\"><span class = \"ip-authors\"> Perchetti GA; Zhu H; Mills MG; Shrestha L; Wagner C; Bakhash SM; Lin MJ; Xie H; Huang ML; Mathias P; Bedford T; Jerome KR; Greninger AL; Roychoudhury P<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34170525\">Specific allelic discrimination of N501Y and other SARS-CoV-2 mutations by ddPCR detects B.1.1.7 lineage in Washington State.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Med Virol<\/span> <span class = \"ip-vol\">93(10):5931-5941<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34171548\" data-year=\"2021\"><span class = \"ip-authors\"> Bourassa L; Perchetti GA; Phung Q; Lin MJ; Mills MG; Roychoudhury P; Harmon KG; Reed JC; Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34171548\">A SARS-CoV-2 Nucleocapsid Variant that Affects Antigen Test Performance.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">141:104900<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34183982\" data-year=\"2021\"><span class = \"ip-authors\"> Yoke LH; Lee JM; Krantz EM; Morris J; Marquis S; Bhattacharyya P; So L; Riedo FX; Simmons J; Khaki AR; Cheng GS; Greninger AL; Pergam SA; Waghmare A; Ogimi C; Liu C<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34183982\">Clinical and Virologic Characteristics and Outcomes of Coronavirus Disease 2019 at a Cancer Center.<\/a><\/span> &nbsp<span class = \"ip-journal\">Open Forum Infect Dis<\/span> <span class = \"ip-vol\">8(6):ofab193<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34272225\" data-year=\"2021\"><span class = \"ip-authors\"> Peng B; Zhou W; Pettit RW; Yu P; Matos PG; Greninger AL; McCashin J; Amos CI<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34272225\">Reducing COVID-19 quarantine with SARS-CoV-2 testing: a simulation study.<\/a><\/span> &nbsp<span class = \"ip-journal\">BMJ Open<\/span> <span class = \"ip-vol\">11(7):e050473<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34561300\" data-year=\"2021\"><span class = \"ip-authors\"> Ye C; Chiem K; Park JG; Silvas JA; Morales Vasquez D; Sourimant J; Lin MJ; Greninger AL; Plemper RK; Torrelles JB; Kobie JJ; Walter MR; de la Torre JC; Martinez-Sobrido L<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34561300\">Analysis of SARS-CoV-2 infection dynamic in vivo using reporter-expressing viruses.<\/a><\/span> &nbsp<span class = \"ip-journal\">Proc Natl Acad Sci U S A<\/span> <span class = \"ip-vol\">118<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34292778\" data-year=\"2021\"><span class = \"ip-authors\"> Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34292778\">Unbiased Pandemic Pathogen Detection and the Federal Register.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">59(10):e0134621<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34450558\" data-year=\"2021\"><span class = \"ip-authors\"> Berg MG; Zhen W; Lucic D; Degli-Angeli EJ; Anderson M; Forberg K; Olivo A; Sheikh F; Toolsie D; Greninger AL; Cloherty GA; Coombs RW; Berry GJ<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34450558\">Development of the RealTime SARS-CoV-2 quantitative Laboratory Developed Test and correlation with viral culture as a measure of infectivity.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">143:104945<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34492041\" data-year=\"2021\"><span class = \"ip-authors\"> Lin MJ; Haynes AM; Addetia A; Lieberman NAP; Phung Q; Xie H; Nguyen TV; Molini BJ; Lukehart SA; Giacani L; Greninger AL<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34492041\">Longitudinal TprK profiling of in vivo and in vitro-propagated Treponema pallidum subsp. pallidum reveals accumulation of antigenic variants in absence of immune pressure.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Negl Trop Dis<\/span> <span class = \"ip-vol\">15(9):e0009753<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34495697\" data-year=\"2021\"><span class = \"ip-authors\"> Chiem K; Morales Vasquez D; Silvas JA; Park JG; Piepenbrink MS; Sourimant J; Lin MJ; Greninger AL; Plemper RK; Torrelles JB; Walter MR; de la Torre JC; Kobie JK; Ye C; Martinez-Sobrido L<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34495697\">A Bifluorescent-Based Assay for the Identification of Neutralizing Antibodies against SARS-CoV-2 Variants of Concern In Vitro and In Vivo.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">95(22):e0112621<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"34545376\" data-year=\"2021\"><span class = \"ip-authors\"> Choudhary MC; Chew KW; Deo R; Flynn JP; Regan J; Crain CR; Moser C; Hughes M; Ritz J; Ribeiro RM; Ke R; Dragavon JA; Javan AC; Nirula A; Klekotka P; Greninger AL; Fletcher CV; Daar ES; Wohl DA; Eron JJ; Currier JS; Parikh UM; Sieg SF; Perelson AS; Coombs RW; Smith DM; Li JZ<\/span>, <span class = \"ip-date\">2021<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34545376\">Emergence of SARS-CoV-2 Resistance with Monoclonal Antibody Therapy.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32444880\" data-year=\"2020\"><span class = \"ip-authors\"> Buckner FS; McCulloch DJ; Atluri V; Blain M; McGuffin SA; Nalla AK; Huang ML; Greninger AL; Jerome KR; Cohen SA; Neme S; Green ML; Chu HY; Kim HN<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32444880\">Clinical Features and Outcomes of 105 Hospitalized Patients With COVID-19 in Seattle, Washington.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">71(16):2167-2173<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32405257\" data-year=\"2020\"><span class = \"ip-authors\"> Perchetti GA; Nalla AK; Huang ML; Zhu H; Wei Y; Stensland L; Loprieno MA; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32405257\">Validation of SARS-CoV-2 detection across multiple specimen types.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">128:104438<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32414839\" data-year=\"2020\"><span class = \"ip-authors\"> Perchetti GA; Huang ML; Peddu V; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32414839\">Stability of SARS-CoV-2 in Phosphate-Buffered Saline for Molecular Detection.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">58<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32437547\" data-year=\"2020\"><span class = \"ip-authors\"> Roxby AC; Greninger AL; Hatfield KM; Lynch JB; Dellit TH; James A; Taylor J; Page LC; Kimball A; Arons M; Munanga A; Stone N; Jernigan JA; Reddy SC; Lewis J; Cohen SA; Jerome KR; Duchin JS; Neme S<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32437547\">Outbreak Investigation of COVID-19 Among Residents and Staff of an Independent and Assisted Living Community for Older Adults in Seattle, Washington.<\/a><\/span> &nbsp<span class = \"ip-journal\">JAMA Intern Med<\/span> <span class = \"ip-vol\">180(8):1101-1105<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32511464\" data-year=\"2020\"><span class = \"ip-authors\"> Casto AM; Huang ML; Nalla A; Perchetti GA; Sampoleo R; Shrestha L; Wei Y; Zhu H; Greninger AL; Jerome KR<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32511464\">Comparative Performance of SARS-CoV-2 Detection Assays using Seven Different Primer\/Probe Sets and One Assay Kit.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32476285\" data-year=\"2020\"><span class = \"ip-authors\"> Lieberman JA; Mays JA; Wells C; Cent A; Bell D; Bankson DD; Greninger AL; Jerome KR; Limaye AP<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32476285\">Expedited SARS-CoV-2 screening of donors and recipients supports continued solid organ transplantation.<\/a><\/span> &nbsp<span class = \"ip-journal\">Am J Transplant<\/span> <span class = \"ip-vol\">20(11):3106-3112<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32493788\" data-year=\"2020\"><span class = \"ip-authors\"> Mays JA; Greninger AL; Jerome KR; Lynch JB; Mathias PC<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32493788\">Preprocedural Surveillance Testing for SARS-CoV-2 in an Asymptomatic Population in the Seattle Region Shows Low Rates of Positivity.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">58<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32504946\" data-year=\"2020\"><span class = \"ip-authors\"> Degli-Angeli E; Dragavon J; Huang ML; Lucic D; Cloherty G; Jerome KR; Greninger AL; Coombs RW<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32504946\">Validation and verification of the Abbott RealTime SARS-CoV-2 assay analytical and clinical performance.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">129:104474<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32511328\" data-year=\"2020\"><span class = \"ip-authors\"> Bruce EA; Huang ML; Perchetti GA; Tighe S; Laaguiby P; Hoffman JJ; Gerrard DL; Nalla AK; Wei Y; Greninger AL; Diehl SA; Shirley DJ; Leonard DGB; Huston CD; Kirkpatrick BD; Dragon JA; Crothers JW; Jerome KR; Botten JW<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32511328\">DIRECT RT-qPCR DETECTION OF SARS-CoV-2 RNA FROM PATIENT NASOPHARYNGEAL SWABS WITHOUT AN RNA EXTRACTION STEP.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32383728\" data-year=\"2020\"><span class = \"ip-authors\"> Randhawa AK; Fisher LH; Greninger AL; Li SS; Andriesen J; Corey L; Jerome KR<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32383728\">Changes in SARS-CoV-2 Positivity Rate in Outpatients in Seattle and Washington State, March 1-April 16, 2020.<\/a><\/span> &nbsp<span class = \"ip-journal\">JAMA<\/span> <span class = \"ip-vol\">323(22):2334-2336<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32511521\" data-year=\"2020\"><span class = \"ip-authors\"> Joung J; Ladha A; Saito M; Segel M; Bruneau R; Huang MW; Kim NG; Yu X; Li J; Walker BD; Greninger AL; Jerome KR; Gootenberg JS; Abudayyeh OO; Zhang F<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32511521\">Point-of-care testing for COVID-19 using SHERLOCK diagnostics.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32511542\" data-year=\"2020\"><span class = \"ip-authors\"> Long DR; Gombar S; Hogan CA; Greninger AL; OReilly Shah V; Bryson-Cahn C; Stevens B; Rustagi A; Jerome KR; Kong CS; Zehnder J; Shah NH; Weiss NS; Pinsky BA; Sunshine J<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32511542\">Occurrence and Timing of Subsequent SARS-CoV-2 RT-PCR Positivity Among Initially Negative Patients.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32386545\" data-year=\"2020\"><span class = \"ip-authors\"> Fauver JR; Petrone ME; Hodcroft EB; Shioda K; Ehrlich HY; Watts AG; Vogels CBF; Brito AF; Alpert T; Muyombwe A; Razeq J; Downing R; Cheemarla NR; Wyllie AL; Kalinich CC; Ott IM; Quick J; Loman NJ; Neugebauer KM; Greninger AL; Jerome KR; Roychoudhury P; Xie H; Shrestha L; Huang ML; Pitzer VE; Iwasaki A; Omer SB; Khan K; Bogoch II; Martinello RA; Foxman EF; Landry ML; Neher RA; Ko AI; Grubaugh ND<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32386545\">Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States.<\/a><\/span> &nbsp<span class = \"ip-journal\">Cell<\/span> <span class = \"ip-vol\">181(5):990-996.e5<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32327704\" data-year=\"2020\"><span class = \"ip-authors\"> Barrett SLR; Holmes EA; Long DR; Shean RC; Bautista GE; Ravishankar S; Peddu V; Cookson BT; Singh PK; Greninger AL; Salipante SJ<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32327704\">Cell free DNA from respiratory pathogens is detectable in the blood plasma of Cystic Fibrosis patients.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">10(1):6903<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32381641\" data-year=\"2020\"><span class = \"ip-authors\"> Bryan A; Pepper G; Wener MH; Fink SL; Morishima C; Chaudhary A; Jerome KR; Mathias PC; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32381641\">Performance Characteristics of the Abbott Architect SARS-CoV-2 IgG Assay and Seroprevalence in Boise, Idaho.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">58<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32111931\" data-year=\"2020\"><span class = \"ip-authors\"> Peddu V; Bradley BT; Casto AM; Shree R; Colbert BG; Xie H; Santo TK; Huang ML; Cheng EY; Konnick E; Salipante SJ; Jerome KR; Lockwood CM; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32111931\">High-resolution profiling of human cytomegalovirus cell-free DNA in human plasma highlights its exceptionally fragmented nature.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">10(1):3734<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31016321\" data-year=\"2020\"><span class = \"ip-authors\"> Casto AM; Roychoudhury P; Xie H; Selke S; Perchetti GA; Wofford H; Huang ML; Verjans GMGM; Gottlieb GS; Wald A; Jerome KR; Koelle DM; Johnston C; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31016321\">Large, Stable, Contemporary Interspecies Recombination Events in Circulating Human Herpes Simplex Viruses.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">221(8):1271-1279<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31665255\" data-year=\"2020\"><span class = \"ip-authors\"> Greninger AL; Addetia A; Starr K; Cybulski RJ; Stewart MK; Salipante SJ; Bryan AB; Cookson B; Gaudreau C; Bekal S; Fang FC<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31665255\">International Spread of Multidrug-Resistant Campylobacter coli in Men Who Have Sex With Men in Washington State and Qu\u00e9bec, 2015-2018.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">71(8):1896-1904<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31970398\" data-year=\"2020\"><span class = \"ip-authors\"> Casto AM; Stout SC; Selvarangan R; Freeman AF; Newell BD; Stahl ED; Ahmed AA; Greninger AL; Yin DE<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31970398\">Evaluation of Genotypic Antiviral Resistance Testing as an Alternative to Phenotypic Testing in a Patient with DOCK8 Deficiency and Severe HSV-1 Disease.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">221(12):2035-2042<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31982335\" data-year=\"2020\"><span class = \"ip-authors\"> Paul GR; Leber A; Nemastil CJ; Novak KJ; Brady M; Stack-Simone S; Greninger AL; Antonara S<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31982335\">Identification of Mycobacterium porcinum in patients with cystic Fibrosis: Pathogen or contaminant?<\/a><\/span> &nbsp<span class = \"ip-journal\">J Cyst Fibros<\/span> <span class = \"ip-vol\">19(4):580-586<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32047132\" data-year=\"2020\"><span class = \"ip-authors\"> Marcink TC; Yariv E; Rybkina K; M\u00e1s V; Bovier FT; des Georges A; Greninger AL; Alabi CA; Porotto M; Ben-Tal N; Moscona A<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32047132\">Hijacking the Fusion Complex of Human Parainfluenza Virus as an Antiviral Strategy.<\/a><\/span> &nbsp<span class = \"ip-journal\">mBio<\/span> <span class = \"ip-vol\">11<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32102858\" data-year=\"2020\"><span class = \"ip-authors\"> Pandey U; Greninger AL; Levin GR; Jerome KR; Anand VC; Dien Bard J<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32102858\">Pathogen or Bystander: Clinical Significance of Detecting Human Herpesvirus 6 in Pediatric Cerebrospinal Fluid.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">58<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32179557\" data-year=\"2020\"><span class = \"ip-authors\"> Jing L; Ott M; Church CD; Kulikauskas RM; Ibrani D; Iyer JG; Afanasiev OK; Colunga A; Cook MM; Xie H; Greninger AL; Paulson KG; Chapuis AG; Bhatia S; Nghiem P; Koelle DM<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32179557\">Prevalent and Diverse Intratumoral Oncoprotein-Specific CD8(+) T Cells within Polyomavirus-Driven Merkel Cell Carcinomas.<\/a><\/span> &nbsp<span class = \"ip-journal\">Cancer Immunol Res<\/span> <span class = \"ip-vol\">8(5):648-659<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32379863\" data-year=\"2020\"><span class = \"ip-authors\"> Peddu V; Shean RC; Xie H; Shrestha L; Perchetti GA; Minot SS; Roychoudhury P; Huang ML; Nalla A; Reddy SB; Phung Q; Reinhardt A; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32379863\">Metagenomic Analysis Reveals Clinical SARS-CoV-2 Infection and Bacterial or Viral Superinfection and Colonization.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Chem<\/span> <span class = \"ip-vol\">66(7):966-972<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32227758\" data-year=\"2020\"><span class = \"ip-authors\"> Bhatraju PK; Ghassemieh BJ; Nichols M; Kim R; Jerome KR; Nalla AK; Greninger AL; Pipavath S; Wurfel MM; Evans L; Kritek PA; West TE; Luks A; Gerbino A; Dale CR; Goldman JD; O'Mahony S; Mikacenic C<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32227758\">Covid-19 in Critically Ill Patients in the Seattle Region - Case Series.<\/a><\/span> &nbsp<span class = \"ip-journal\">N Engl J Med<\/span> <span class = \"ip-vol\">382(21):2012-2022<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32251462\" data-year=\"2020\"><span class = \"ip-authors\"> Addetia A; Tantalo LC; Lin MJ; Xie H; Huang ML; Marra CM; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32251462\">Comparative genomics and full-length Tprk profiling of Treponema pallidum subsp. pallidum reinfection.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Negl Trop Dis<\/span> <span class = \"ip-vol\">14(4):e0007921<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32269100\" data-year=\"2020\"><span class = \"ip-authors\"> Nalla AK; Casto AM; Huang MW; Perchetti GA; Sampoleo R; Shrestha L; Wei Y; Zhu H; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32269100\">Comparative Performance of SARS-CoV-2 Detection Assays Using Seven Different Primer-Probe Sets and One Assay Kit.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">58<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32271726\" data-year=\"2020\"><span class = \"ip-authors\"> Roxby AC; Greninger AL; Hatfield KM; Lynch JB; Dellit TH; James A; Taylor J; Page LC; Kimball A; Arons M; Schieve LA; Munanga A; Stone N; Jernigan JA; Reddy SC; Lewis J; Cohen SA; Jerome KR; Duchin JS; Neme S<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32271726\">Detection of SARS-CoV-2 Among Residents and Staff Members of an Independent and Assisted Living Community for Older Adults - Seattle, Washington, 2020.<\/a><\/span> &nbsp<span class = \"ip-journal\">MMWR Morb Mortal Wkly Rep<\/span> <span class = \"ip-vol\">69(14):416-418<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32511581\" data-year=\"2020\"><span class = \"ip-authors\"> Waghmare A; Krantz EM; Baral S; Vasquez E; Loeffelholz T; Chung EL; Pandey U; Kuypers J; Duke ER; Jerome KR; Greninger AL; Reeves DB; Hladik F; Cardozo-Ojeda EF; Boeckh M; Schiffer JT<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32511581\">Reliability of self-sampling for accurate assessment of respiratory virus viral and immunologic kinetics.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32350048\" data-year=\"2020\"><span class = \"ip-authors\"> Lieberman JA; Pepper G; Naccache SN; Huang ML; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32350048\">Comparison of Commercially Available and Laboratory-Developed Assays for In Vitro Detection of SARS-CoV-2 in Clinical Laboratories.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">58<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32511579\" data-year=\"2020\"><span class = \"ip-authors\"> Deng X; Gu W; Federman S; du Plessis L; Pybus OG; Faria N; Wang C; Yu G; Pan CY; Guevara H; Sotomayor-Gonzalez A; Zorn K; Gopez A; Servellita V; Hsu E; Miller S; Bedford T; Greninger AL; Roychoudhury P; Starita LM; Famulare M; Chu HY; Shendure J; Jerome KR; Anderson C; Gangavarapu K; Zeller M; Spencer E; Andersen KG; MacCannell D; Paden CR; Li Y; Zhang J; Tong S; Armstrong G; Morrow S; Willis M; Matyas BT; Mase S; Kasirye O; Park M; Chan C; Yu AT; Chai SJ; Villarino E; Bonin B; Wadford DA; Chiu CY<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32511579\">A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32513865\" data-year=\"2020\"><span class = \"ip-authors\"> Deng X; Gu W; Federman S; du Plessis L; Pybus OG; Faria NR; Wang C; Yu G; Bushnell B; Pan CY; Guevara H; Sotomayor-Gonzalez A; Zorn K; Gopez A; Servellita V; Hsu E; Miller S; Bedford T; Greninger AL; Roychoudhury P; Starita LM; Famulare M; Chu HY; Shendure J; Jerome KR; Anderson C; Gangavarapu K; Zeller M; Spencer E; Andersen KG; MacCannell D; Paden CR; Li Y; Zhang J; Tong S; Armstrong G; Morrow S; Willis M; Matyas BT; Mase S; Kasirye O; Park M; Masinde G; Chan C; Yu AT; Chai SJ; Villarino E; Bonin B; Wadford DA; Chiu CY<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32513865\">Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.<\/a><\/span> &nbsp<span class = \"ip-journal\">Science<\/span> <span class = \"ip-vol\">369(6503):582-587<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32511596\" data-year=\"2020\"><span class = \"ip-authors\"> Bedford T; Greninger AL; Roychoudhury P; Starita LM; Famulare M; Huang ML; Nalla A; Pepper G; Reinhardt A; Xie H; Shrestha L; Nguyen TN; Adler A; Brandstetter E; Cho S; Giroux D; Han PD; Fay K; Frazar CD; Ilcisin M; Lacombe K; Lee J; Kiavand A; Richardson M; Sibley TR; Truong M; Wolf CR; Nickerson DA; Rieder MJ; Englund JA; Hadfield J; Hodcroft EB; Huddleston J; Moncla LH; M\u00fcller NF; Neher RA; Deng X; Gu W; Federman S; Chiu C; Duchin J; Gautom R; Melly G; Hiatt B; Dykema P; Lindquist S; Queen K; Tao Y; Uehara A; Tong S; MacCannell D; Armstrong GL; Baird GS; Chu HY; Shendure J; Jerome KR<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32511596\">Cryptic transmission of SARS-CoV-2 in Washington State.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32826322\" data-year=\"2020\"><span class = \"ip-authors\"> Addetia A; Crawford KHD; Dingens A; Zhu H; Roychoudhury P; Huang ML; Jerome KR; Bloom JD; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32826322\">Neutralizing Antibodies Correlate with Protection from SARS-CoV-2 in Humans during a Fishery Vessel Outbreak with a High Attack Rate.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">58<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33349793\" data-year=\"2020\"><span class = \"ip-authors\"> Bryan A; Fink SL; Gattuso MA; Pepper G; Chaudhary A; Wener MH; Morishima C; Jerome KR; Mathias PC; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33349793\">SARS-CoV-2 Viral Load on Admission Is Associated With 30-Day Mortality.<\/a><\/span> &nbsp<span class = \"ip-journal\">Open Forum Infect Dis<\/span> <span class = \"ip-vol\">7(12):ofaa535<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33109767\" data-year=\"2020\"><span class = \"ip-authors\"> Addetia A; Lin MJ; Phung Q; Xie H; Huang ML; Ciccarese G; Dal Conte I; Cusini M; Drago F; Giacani L; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33109767\">Estimation of Full-Length TprK Diversity in Treponema pallidum subsp. pallidum.<\/a><\/span> &nbsp<span class = \"ip-journal\">mBio<\/span> <span class = \"ip-vol\">11<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33082259\" data-year=\"2020\"><span class = \"ip-authors\"> Outlaw VK; Bovier FT; Mears MC; Cajimat MN; Zhu Y; Lin MJ; Addetia A; Lieberman NAP; Peddu V; Xie X; Shi PY; Greninger AL; Gellman SH; Bente DA; Moscona A; Porotto M<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33082259\">Inhibition of Coronavirus Entry In Vitro and Ex Vivo by a Lipid-Conjugated Peptide Derived from the SARS-CoV-2 Spike Glycoprotein HRC Domain.<\/a><\/span> &nbsp<span class = \"ip-journal\">mBio<\/span> <span class = \"ip-vol\">11<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33052361\" data-year=\"2020\"><span class = \"ip-authors\"> Boonyaratanakornkit J; Morishima C; Selke S; Zamora D; McGuffin S; Shapiro AE; Campbell VL; McClurkan CL; Jing L; Gross R; Liang J; Postnikova E; Mazur S; Chaudhary A; Das MK; Fink SL; Bryan A; Greninger AL; Jerome KR; Holbrook MR; Gernsheimer TB; Wener MH; Wald A; Koelle DM<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33052361\">Clinical, laboratory, and temporal predictors of neutralizing antibodies to SARS-CoV-2 after COVID-19.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33046529\" data-year=\"2020\"><span class = \"ip-authors\"> Addetia A; Lin MJ; Peddu V; Roychoudhury P; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33046529\">Sensitive Recovery of Complete SARS-CoV-2 Genomes from Clinical Samples by Use of Swift Biosciences' SARS-CoV-2 Multiplex Amplicon Sequencing Panel.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">59<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33028602\" data-year=\"2020\"><span class = \"ip-authors\"> Rassoulian Barrett S; Hoffman NG; Rosenthal C; Bryan A; Marshall DA; Lieberman J; Greninger AL; Peddu V; Cookson BT; Salipante SJ<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33028602\">Sensitive Identification of Bacterial DNA in Clinical Specimens by Broad-Range 16S rRNA Gene Enrichment.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">58<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33024981\" data-year=\"2020\"><span class = \"ip-authors\"> M\u00fcller NF; Wagner C; Frazar CD; Roychoudhury P; Lee J; Moncla LH; Pelle B; Richardson M; Ryke E; Xie H; Shrestha L; Addetia A; Rachleff VM; Lieberman NAP; Huang ML; Gautom R; Melly G; Hiatt B; Dykema P; Adler A; Brandstetter E; Han PD; Fay K; Llcisin M; Lacombe K; Sibley TR; Truong M; Wolf CR; Boeckh M; Englund JA; Famulare M; Lutz BR; Rieder MJ; Thompson M; Duchin JS; Starita LM; Chu HY; Shendure J; Jerome KR; Lindquist S; Greninger AL; Nickerson DA; Bedford T<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33024981\">Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"33006983\" data-year=\"2020\"><span class = \"ip-authors\"> Bruce EA; Huang ML; Perchetti GA; Tighe S; Laaguiby P; Hoffman JJ; Gerrard DL; Nalla AK; Wei Y; Greninger AL; Diehl SA; Shirley DJ; Leonard DGB; Huston CD; Kirkpatrick BD; Dragon JA; Crothers JW; Jerome KR; Botten JW<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33006983\">Direct RT-qPCR detection of SARS-CoV-2 RNA from patient nasopharyngeal swabs without an RNA extraction step.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Biol<\/span> <span class = \"ip-vol\">18(10):e3000896<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32995830\" data-year=\"2020\"><span class = \"ip-authors\"> Goldman JD; Wang K; R\u00f6ltgen K; Nielsen SCA; Roach JC; Naccache SN; Yang F; Wirz OF; Yost KE; Lee JY; Chun K; Wrin T; Petropoulos CJ; Lee I; Fallen S; Manner PM; Wallick JA; Algren HA; Murray KM; Su Y; Hadlock J; Jeharajah J; Berrington WR; Pappas GP; Nyatsatsang ST; Greninger AL; Satpathy AT; Pauk JS; Boyd SD; Heath JR<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32995830\">Reinfection with SARS-CoV-2 and Failure of Humoral Immunity: a case report.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32947206\" data-year=\"2020\"><span class = \"ip-authors\"> McAulay K; Bryan A; Greninger AL; Grill F; Lake D; Kaleta EJ; Grys TE<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32947206\">Retrospective clinical evaluation of 4 lateral flow assays for the detection of SARS-CoV-2 IgG.<\/a><\/span> &nbsp<span class = \"ip-journal\">Diagn Microbiol Infect Dis<\/span> <span class = \"ip-vol\">98(3):115161<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32941977\" data-year=\"2020\"><span class = \"ip-authors\"> Mohon AN; Oberding L; Hundt J; van Marle G; Pabbaraju K; Berenger BM; Lisboa L; Griener T; Czub M; Doolan C; Servellita V; Chiu CY; Greninger AL; Jerome KR; Pillai DR<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32941977\">Optimization and clinical validation of dual-target RT-LAMP for SARS-CoV-2.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol Methods<\/span> <span class = \"ip-vol\">286:113972<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32937062\" data-year=\"2020\"><span class = \"ip-authors\"> Joung J; Ladha A; Saito M; Kim NG; Woolley AE; Segel M; Barretto RPJ; Ranu A; Macrae RK; Faure G; Ioannidi EI; Krajeski RN; Bruneau R; Huang MW; Yu XG; Li JZ; Walker BD; Hung DT; Greninger AL; Jerome KR; Gootenberg JS; Abudayyeh OO; Zhang F<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32937062\">Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing.<\/a><\/span> &nbsp<span class = \"ip-journal\">N Engl J Med<\/span> <span class = \"ip-vol\">383(15):1492-1494<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32511630\" data-year=\"2020\"><span class = \"ip-authors\"> Fauver JR; Petrone ME; Hodcroft EB; Shioda K; Ehrlich HY; Watts AG; Vogels CBF; Brito AF; Alpert T; Muyombwe A; Razeq J; Downing R; Cheemarla NR; Wyllie AL; Kalinich CC; Ott I; Quick J; Loman NJ; Neugebauer KM; Greninger AL; Jerome KR; Roychoudhury P; Xie H; Shrestha L; Huang ML; Pitzer VE; Iwasaki A; Omer SB; Khan K; Bogoch II; Martinello RA; Foxman EF; Landry ML; Neher RA; Ko AI; Grubaugh ND<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32511630\">Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32898168\" data-year=\"2020\"><span class = \"ip-authors\"> Lieberman NAP; Peddu V; Xie H; Shrestha L; Huang ML; Mears MC; Cajimat MN; Bente DA; Shi PY; Bovier F; Roychoudhury P; Jerome KR; Moscona A; Porotto M; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32898168\">In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Biol<\/span> <span class = \"ip-vol\">18(9):e3000849<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32913002\" data-year=\"2020\"><span class = \"ip-authors\"> Bedford T; Greninger AL; Roychoudhury P; Starita LM; Famulare M; Huang ML; Nalla A; Pepper G; Reinhardt A; Xie H; Shrestha L; Nguyen TN; Adler A; Brandstetter E; Cho S; Giroux D; Han PD; Fay K; Frazar CD; Ilcisin M; Lacombe K; Lee J; Kiavand A; Richardson M; Sibley TR; Truong M; Wolf CR; Nickerson DA; Rieder MJ; Englund JA; Hadfield J; Hodcroft EB; Huddleston J; Moncla LH; M\u00fcller NF; Neher RA; Deng X; Gu W; Federman S; Chiu C; Duchin JS; Gautom R; Melly G; Hiatt B; Dykema P; Lindquist S; Queen K; Tao Y; Uehara A; Tong S; MacCannell D; Armstrong GL; Baird GS; Chu HY; Shendure J; Jerome KR<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32913002\">Cryptic transmission of SARS-CoV-2 in Washington state.<\/a><\/span> &nbsp<span class = \"ip-journal\">Science<\/span> <span class = \"ip-vol\">370(6516):571-575<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32817980\" data-year=\"2020\"><span class = \"ip-authors\"> Addetia A; Crawford KH; Dingens A; Zhu H; Roychoudhury P; Huang ML; Jerome KR; Bloom JD; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32817980\">Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate.<\/a><\/span> &nbsp<span class = \"ip-journal\">medRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32607510\" data-year=\"2020\"><span class = \"ip-authors\"> Lieberman NAP; Peddu V; Xie H; Shrestha L; Huang ML; Mears MC; Cajimat MN; Bente DA; Shi PY; Bovier F; Roychoudhury P; Jerome KR; Moscona A; Porotto M; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32607510\">In vivo antiviral host response to SARS-CoV-2 by viral load, sex, and age.<\/a><\/span> &nbsp<span class = \"ip-journal\">bioRxiv<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32511679\" data-year=\"2020\"><span class = \"ip-authors\"> Fang FC; Naccache SN; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32511679\">The Laboratory Diagnosis of Coronavirus Disease 2019- Frequently Asked Questions.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">71(11):2996-3001<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32535397\" data-year=\"2020\"><span class = \"ip-authors\"> Perchetti GA; Nalla AK; Huang ML; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32535397\">Multiplexing primer\/probe sets for detection of SARS-CoV-2 by qRT-PCR.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">129:104499<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32548613\" data-year=\"2020\"><span class = \"ip-authors\"> Mani NS; Budak JZ; Lan KF; Bryson-Cahn C; Zelikoff A; Barker GEC; Grant CW; Hart K; Barbee CJ; Sandoval MD; Dostal CL; Corcorran M; Ungerleider HM; Gates JO; Olin SV; Bryan A; Hoffman NG; Marquis SR; Harvey ML; Nasenbeny K; Mertens K; Chew LD; Greninger AL; Jerome KR; Pottinger PS; Dellit TH; Liu C; Pergam SA; Neme S; Lynch JB; Kim HN; Cohen SA<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32548613\">Prevalence of Coronavirus Disease 2019 Infection and Outcomes Among Symptomatic Healthcare Workers in Seattle, Washington.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">71(10):2702-2707<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32811834\" data-year=\"2020\"><span class = \"ip-authors\"> Aubert M; Strongin DE; Roychoudhury P; Loprieno MA; Haick AK; Klouser LM; Stensland L; Huang ML; Makhsous N; Tait A; De Silva Feelixge HS; Galetto R; Duchateau P; Greninger AL; Stone D; Jerome KR<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32811834\">Gene editing and elimination of latent herpes simplex virus in vivo.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Commun<\/span> <span class = \"ip-vol\">11(1):4148<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32561446\" data-year=\"2020\"><span class = \"ip-authors\"> Mitchell SH; Bulger EM; Duber HC; Greninger AL; Ong TD; Morris SC; Chew LD; Haffner TM; Sakata VL; Lynch JB<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32561446\">Western Washington State COVID-19 Experience: Keys to Flattening the Curve and Effective Health System Response.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Am Coll Surg<\/span> <span class = \"ip-vol\">231(3):316-324.e1<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32554480\" data-year=\"2020\"><span class = \"ip-authors\"> Greene DN; Dickerson JA; Greninger AL; Schmidt RL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32554480\">When To Retest: an Examination of Repeat COVID-19 PCR Patterns in an Ambulatory Population.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">58<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32623351\" data-year=\"2020\"><span class = \"ip-authors\"> Addetia A; Xie H; Roychoudhury P; Shrestha L; Loprieno M; Huang ML; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32623351\">Identification of multiple large deletions in ORF7a resulting in in-frame gene fusions in clinical SARS-CoV-2 isolates.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">129:104523<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32661315\" data-year=\"2020\"><span class = \"ip-authors\"> Cox RM; Sourimant J; Toots M; Yoon JJ; Ikegame S; Govindarajan M; Watkinson RE; Thibault P; Makhsous N; Lin MJ; Marengo JR; Sticher Z; Kolykhalov AA; Natchus MG; Greninger AL; Lee B; Plemper RK<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32661315\">Orally efficacious broad-spectrum allosteric inhibitor of paramyxovirus polymerase.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Microbiol<\/span> <span class = \"ip-vol\">5(10):1232-1246<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32697321\" data-year=\"2020\"><span class = \"ip-authors\"> McCulloch DJ; Kim AE; Wilcox NC; Logue JK; Greninger AL; Englund JA; Chu HY<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32697321\">Comparison of Unsupervised Home Self-collected Midnasal Swabs With Clinician-Collected Nasopharyngeal Swabs for Detection of SARS-CoV-2 Infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">JAMA Netw Open<\/span> <span class = \"ip-vol\">3(7):e2016382<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32703897\" data-year=\"2020\"><span class = \"ip-authors\"> Greninger AL; Jerome KR<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32703897\">The First Quarter of SARS-CoV-2 Testing: the University of Washington Medicine Experience.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">58<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32781734\" data-year=\"2020\"><span class = \"ip-authors\"> Casto AM; Huang MW; Xie H; Jerome KR; Wald A; Johnston CM; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32781734\">Herpes Simplex Virus Mistyping due to HSV-1 \u00d7 HSV-2 Interspecies Recombination in Viral Gene Encoding Glycoprotein B.<\/a><\/span> &nbsp<span class = \"ip-journal\">Viruses<\/span> <span class = \"ip-vol\">12<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32805524\" data-year=\"2020\"><span class = \"ip-authors\"> Perchetti GA; Sullivan KW; Pepper G; Huang ML; Breit N; Mathias P; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32805524\">Pooling of SARS-CoV-2 samples to increase molecular testing throughput.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">131:104570<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"32650276\" data-year=\"2020\"><span class = \"ip-authors\"> Creager HM; Cabrera B; Schnaubelt A; Cox JL; Cushman-Vokoun AM; Shakir SM; Tardif KD; Huang ML; Jerome KR; Greninger AL; Drobysheva D; Spaulding U; Rogatcheva M; Bourzac KM; Hinrichs SH; Broadhurst MJ; Fey PD<\/span>, <span class = \"ip-date\">2020<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32650276\">Clinical evaluation of the BioFire\u00ae Respiratory Panel 2.1 and detection of SARS-CoV-2.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Virol<\/span> <span class = \"ip-vol\">129:104538<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31032855\" data-year=\"2019\"><span class = \"ip-authors\"> Melendez D; Roberts MC; Greninger AL; Weissman S; No D; Rabinowitz P; Wasser S<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31032855\">Whole-genome analysis of extraintestinal pathogenic Escherichia coli (ExPEC) MDR ST73 and ST127 isolated from endangered southern resident killer whales (Orcinus orca).<\/a><\/span> &nbsp<span class = \"ip-journal\">J Antimicrob Chemother<\/span> <span class = \"ip-vol\">74(8):2176-2180<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30383234\" data-year=\"2019\"><span class = \"ip-authors\"> Ramchandani MS; Jing L; Russell RM; Tran T; Laing KJ; Magaret AS; Selke S; Cheng A; Huang ML; Xie H; Strachan E; Greninger AL; Roychoudhury P; Jerome KR; Wald A; Koelle DM<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30383234\">Viral Genetics Modulate Orolabial Herpes Simplex Virus Type 1 Shedding in Humans.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">219(7):1058-1066<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30429252\" data-year=\"2019\"><span class = \"ip-authors\"> Vasireddy R; Vasireddy S; Brown-Elliott BA; Greninger AL; Davidson RM; Ard KL; Turenne CY; Wallace RJ Jr<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30429252\">Mycobacterium talmoniae, a Potential Pulmonary Pathogen Isolated from Multiple Patients with Bronchiectasis in the United States, Including the First Case of Clinical Disease in a Patient with Cystic Fibrosis.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">57<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30576430\" data-year=\"2019\"><span class = \"ip-authors\"> Casto AM; Adler AL; Makhsous N; Crawford K; Qin X; Kuypers JM; Huang ML; Zerr DM; Greninger AL<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30576430\">Prospective, Real-time Metagenomic Sequencing During Norovirus Outbreak Reveals Discrete Transmission Clusters.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Infect Dis<\/span> <span class = \"ip-vol\">69(6):941-948<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30674273\" data-year=\"2019\"><span class = \"ip-authors\"> Shean RC; Makhsous N; Stoddard GD; Lin MJ; Greninger AL<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30674273\">VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank.<\/a><\/span> &nbsp<span class = \"ip-journal\">BMC Bioinformatics<\/span> <span class = \"ip-vol\">20(1):48<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30971462\" data-year=\"2019\"><span class = \"ip-authors\"> Greninger AL<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30971462\">Societal Implications of the Internet of Pathogens.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">57<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30988144\" data-year=\"2019\"><span class = \"ip-authors\"> Addetia A; Greninger AL; Adler A; Yuan S; Makhsous N; Qin X; Zerr DM<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30988144\">A Novel, Widespread qacA Allele Results in Reduced Chlorhexidine Susceptibility in Staphylococcus epidermidis.<\/a><\/span> &nbsp<span class = \"ip-journal\">Antimicrob Agents Chemother<\/span> <span class = \"ip-vol\">63<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31426667\" data-year=\"2019\"><span class = \"ip-authors\"> Shean RC; Greninger AL<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31426667\">One future of clinical metagenomic sequencing for infectious diseases.<\/a><\/span> &nbsp<span class = \"ip-journal\">Expert Rev Mol Diagn<\/span> <span class = \"ip-vol\">19(10):849-851<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31043533\" data-year=\"2019\"><span class = \"ip-authors\"> Hanson DJ; Tsvetkova O; Rerolle GF; Greninger AL; Sette A; Jing L; Campbell VL; Koelle DM<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31043533\">Genome-Wide Approach to the CD4 T-Cell Response to Human Herpesvirus 6B.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">93<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31639732\" data-year=\"2019\"><span class = \"ip-authors\"> Greninger AL; Naccache SN<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31639732\">Metagenomics to Assist in the Diagnosis of Bloodstream Infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Appl Lab Med<\/span> <span class = \"ip-vol\">3(4):643-653<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31064833\" data-year=\"2019\"><span class = \"ip-authors\"> Porotto M; Ferren M; Chen YW; Siu Y; Makhsous N; Rima B; Briese T; Greninger AL; Snoeck HW; Moscona A<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31064833\">Authentic Modeling of Human Respiratory Virus Infection in Human Pluripotent Stem Cell-Derived Lung Organoids.<\/a><\/span> &nbsp<span class = \"ip-journal\">mBio<\/span> <span class = \"ip-vol\">10<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31645453\" data-year=\"2019\"><span class = \"ip-authors\"> Toots M; Yoon JJ; Cox RM; Hart M; Sticher ZM; Makhsous N; Plesker R; Barrena AH; Reddy PG; Mitchell DG; Shean RC; Bluemling GR; Kolykhalov AA; Greninger AL; Natchus MG; Painter GR; Plemper RK<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31645453\">Characterization of orally efficacious influenza drug with high resistance barrier in ferrets and human airway epithelia.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Transl Med<\/span> <span class = \"ip-vol\">11<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31777756\" data-year=\"2019\"><span class = \"ip-authors\"> Ikuta K; Roychoudhury P; Xie H; Mcclurkan CL; Walkiewicz M; Makhsous N; Huang ML; Beru Y; Alam M; Shepherd A; Lamotte ED; Patel K; Morris A; \u04aaoruh B; Yu L; Bhattacharya R; Cheng R; Walter RB; Limaye AP; Lockwood CM; Holland SM; Rakita RM; Koelle DM; Greninger AL<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31777756\">Trillions and Trillions: Herpes Simplex Virus-1 Hepatitis in an Immunocompetent Adult.<\/a><\/span> &nbsp<span class = \"ip-journal\">Open Forum Infect Dis<\/span> <span class = \"ip-vol\">6(11):ofz465<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31597766\" data-year=\"2019\"><span class = \"ip-authors\"> Peddu V; Dubuc I; Gravel A; Xie H; Huang ML; Tenenbaum D; Jerome KR; Tardif JC; Dub\u00e9 MP; Flamand L; Greninger AL<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31597766\">Inherited Chromosomally Integrated Human Herpesvirus 6 Demonstrates Tissue-Specific RNA Expression In Vivo That Correlates with an Increased Antibody Immune Response.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">94<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31551348\" data-year=\"2019\"><span class = \"ip-authors\"> Greninger AL; Naccache SN; Pannaraj P; Jerome KR; Dien Bard J; Ruderman JW<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31551348\">Closing the Brief Case: Inherited Chromosomally Integrated Human Herpesvirus 6 (HHV-6) in the Age of Multiplex HHV-6 Testing.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">57<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31551347\" data-year=\"2019\"><span class = \"ip-authors\"> Greninger AL; Naccache SN; Pannaraj P; Jerome KR; Dien Bard J; Ruderman JW<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31551347\">The Brief Case: Inherited Chromosomally Integrated Human Herpesvirus 6 (HHV-6) in the Age of Multiplex HHV-6 Testing.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">57<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"31434723\" data-year=\"2019\"><span class = \"ip-authors\"> Starr K; Greninger AL; Makhsous N; Jerome KR; Cook L<\/span>, <span class = \"ip-date\">2019<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31434723\">Comparison of Three Adenovirus Quantitative PCR Assays with ATCC Reference Strains and Clinical Samples.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">57<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29554870\" data-year=\"2018\"><span class = \"ip-authors\"> Greninger AL; Knudsen GM; Roychoudhury P; Hanson DJ; Sedlak RH; Xie H; Guan J; Nguyen T; Peddu V; Boeckh M; Huang ML; Cook L; Depledge DP; Zerr DM; Koelle DM; Gantt S; Yoshikawa T; Caserta M; Hill JA; Jerome KR<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29554870\">Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6.<\/a><\/span> &nbsp<span class = \"ip-journal\">BMC Genomics<\/span> <span class = \"ip-vol\">19(1):204<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29055712\" data-year=\"2018\"><span class = \"ip-authors\"> Greninger AL<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29055712\">A decade of RNA virus metagenomics is (not) enough.<\/a><\/span> &nbsp<span class = \"ip-journal\">Virus Res<\/span> <span class = \"ip-vol\">244:218-229<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29299533\" data-year=\"2018\"><span class = \"ip-authors\"> Xue KS; Greninger AL; P\u00e9rez-Osorio A; Bloom JD<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29299533\">Cooperating H3N2 Influenza Virus Variants Are Not Detectable in Primary Clinical Samples.<\/a><\/span> &nbsp<span class = \"ip-journal\">mSphere<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29437959\" data-year=\"2018\"><span class = \"ip-authors\"> Thakkar VD; Cox RM; Sawatsky B; da Fontoura Budaszewski R; Sourimant J; Wabbel K; Makhsous N; Greninger AL; von Messling V; Plemper RK<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29437959\">The Unstructured Paramyxovirus Nucleocapsid Protein Tail Domain Modulates Viral Pathogenesis through Regulation of Transcriptase Activity.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">92<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29463249\" data-year=\"2018\"><span class = \"ip-authors\"> Gern BH; Greninger AL; Weissman SJ; Stapp JR; Tao Y; Qin X<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29463249\">Continued in vitro cefazolin susceptibility in methicillin-susceptible Staphylococcus aureus.<\/a><\/span> &nbsp<span class = \"ip-journal\">Ann Clin Microbiol Antimicrob<\/span> <span class = \"ip-vol\">17(1):5<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29491155\" data-year=\"2018\"><span class = \"ip-authors\"> Greninger AL; Roychoudhury P; Makhsous N; Hanson D; Chase J; Krueger G; Xie H; Huang ML; Saunders L; Ablashi D; Koelle DM; Cook L; Jerome KR<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29491155\">Copy Number Heterogeneity, Large Origin Tandem Repeats, and Interspecies Recombination in Human Herpesvirus 6A (HHV-6A) and HHV-6B Reference Strains.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">92<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29491180\" data-year=\"2018\"><span class = \"ip-authors\"> Reeves DB; Magaret AS; Greninger AL; Johnston C; Schiffer JT<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29491180\">Model-based estimation of superinfection prevalence from limited datasets.<\/a><\/span> &nbsp<span class = \"ip-journal\">J R Soc Interface<\/span> <span class = \"ip-vol\">15<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29511571\" data-year=\"2018\"><span class = \"ip-authors\"> Shean RC; Greninger AL<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29511571\">Private collection: high correlation of sample collection and patient admission date in clinical microbiological testing complicates sharing of phylodynamic metadata.<\/a><\/span> &nbsp<span class = \"ip-journal\">Virus Evol<\/span> <span class = \"ip-vol\">4(1):vey005<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29564400\" data-year=\"2018\"><span class = \"ip-authors\"> Qin X; Zhou C; Zerr DM; Adler A; Addetia A; Yuan S; Greninger AL<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29564400\">Heterogeneous Antimicrobial Susceptibility Characteristics in Pseudomonas aeruginosa Isolates from Cystic Fibrosis Patients.<\/a><\/span> &nbsp<span class = \"ip-journal\">mSphere<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30170546\" data-year=\"2018\"><span class = \"ip-authors\"> Thornton CS; Rubin JE; Greninger AL; Peirano G; Chiu CY; Pillai DR<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30170546\">Epidemiological and genomic characterization of community-acquired Clostridium difficile infections.<\/a><\/span> &nbsp<span class = \"ip-journal\">BMC Infect Dis<\/span> <span class = \"ip-vol\">18(1):443<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29891600\" data-year=\"2018\"><span class = \"ip-authors\"> Yoon JJ; Toots M; Lee S; Lee ME; Ludeke B; Luczo JM; Ganti K; Cox RM; Sticher ZM; Edpuganti V; Mitchell DG; Lockwood MA; Kolykhalov AA; Greninger AL; Moore ML; Painter GR; Lowen AC; Tompkins SM; Fearns R; Natchus MG; Plemper RK<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29891600\">Orally Efficacious Broad-Spectrum Ribonucleoside Analog Inhibitor of Influenza and Respiratory Syncytial Viruses.<\/a><\/span> &nbsp<span class = \"ip-journal\">Antimicrob Agents Chemother<\/span> <span class = \"ip-vol\">62<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29898605\" data-year=\"2018\"><span class = \"ip-authors\"> Greninger AL<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29898605\">The challenge of diagnostic metagenomics.<\/a><\/span> &nbsp<span class = \"ip-journal\">Expert Rev Mol Diagn<\/span> <span class = \"ip-vol\">18(7):605-615<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29898986\" data-year=\"2018\"><span class = \"ip-authors\"> Greninger AL; Roychoudhury P; Xie H; Casto A; Cent A; Pepper G; Koelle DM; Huang ML; Wald A; Johnston C; Jerome KR<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29898986\">Ultrasensitive Capture of Human Herpes Simplex Virus Genomes Directly from Clinical Samples Reveals Extraordinarily Limited Evolution in Cell Culture.<\/a><\/span> &nbsp<span class = \"ip-journal\">mSphere<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29912375\" data-year=\"2018\"><span class = \"ip-authors\"> Roberts MC; Garland-Lewis G; Trufan S; Meschke SJ; Fowler H; Shean RC; Greninger AL; Rabinowitz PM<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29912375\">Distribution of Staphylococcus species in dairy cows, workers and shared farm environments.<\/a><\/span> &nbsp<span class = \"ip-journal\">FEMS Microbiol Lett<\/span> <span class = \"ip-vol\">365<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29940028\" data-year=\"2018\"><span class = \"ip-authors\"> Goya S; Valinotto LE; Tittarelli E; Rojo GL; Nabaes Jodar MS; Greninger AL; Zaiat JJ; Marti MA; Mistchenko AS; Viegas M<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29940028\">An optimized methodology for whole genome sequencing of RNA respiratory viruses from nasopharyngeal aspirates.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS One<\/span> <span class = \"ip-vol\">13(6):e0199714<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29970463\" data-year=\"2018\"><span class = \"ip-authors\"> Iketani S; Shean RC; Ferren M; Makhsous N; Aquino DB; des Georges A; Rima B; Mathieu C; Porotto M; Moscona A; Greninger AL<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29970463\">Viral Entry Properties Required for Fitness in Humans Are Lost through Rapid Genomic Change during Viral Isolation.<\/a><\/span> &nbsp<span class = \"ip-journal\">mBio<\/span> <span class = \"ip-vol\">9<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29668933\" data-year=\"2018\"><span class = \"ip-authors\"> Roberts MC; Joshi PR; Greninger AL; Melendez D; Paudel S; Acharya M; Bimali NK; Koju NP; No D; Chalise M; Kyes RC<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29668933\">The human clone ST22 SCCmec IV methicillin-resistant Staphylococcus aureus isolated from swine herds and wild primates in Nepal: is man the common source?<\/a><\/span> &nbsp<span class = \"ip-journal\">FEMS Microbiol Ecol<\/span> <span class = \"ip-vol\">94<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"30305383\" data-year=\"2018\"><span class = \"ip-authors\"> Dalmat RR; Makhsous N; Pepper GG; Magaret A; Jerome KR; Wald A; Greninger AL<\/span>, <span class = \"ip-date\">2018<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30305383\">Limited Marginal Utility of Deep Sequencing for HIV Drug Resistance Testing in the Age of Integrase Inhibitors.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">56<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28219017\" data-year=\"2017\"><span class = \"ip-authors\"> Medina GN; Knudsen GM; Greninger AL; Kloc A; D\u00edaz-San Segundo F; Rieder E; Grubman MJ; DeRisi JL; de Los Santos T<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28219017\">Interaction between FMDV L(pro) and transcription factor ADNP is required for optimal viral replication.<\/a><\/span> &nbsp<span class = \"ip-journal\">Virology<\/span> <span class = \"ip-vol\">505:12-22<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28336132\" data-year=\"2017\"><span class = \"ip-authors\"> Greninger AL; Streithorst J; Golden JA; Chiu CY; Miller S<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28336132\">Complete genome sequence of sequential Pandoraea apista isolates from the same cystic fibrosis patient supports a model of chronic colonization with in vivo strain evolution over time.<\/a><\/span> &nbsp<span class = \"ip-journal\">Diagn Microbiol Infect Dis<\/span> <span class = \"ip-vol\">87(1):1-6<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28287142\" data-year=\"2017\"><span class = \"ip-authors\"> Koelle DM; Norberg P; Fitzgibbon MP; Russell RM; Greninger AL; Huang ML; Stensland L; Jing L; Magaret AS; Diem K; Selke S; Xie H; Celum C; Lingappa JR; Jerome KR; Wald A; Johnston C<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28287142\">Worldwide circulation of HSV-2\u2009\u00d7\u2009HSV-1 recombinant strains.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">7:44084<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28254976\" data-year=\"2017\"><span class = \"ip-authors\"> Shean RC; Makhsous N; Crawford RL; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28254976\">Draft Genome Sequences of Six Novel Picorna-Like Viruses from Washington State Spiders.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">5<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28379561\" data-year=\"2017\"><span class = \"ip-authors\"> Greninger AL; Waghmare A; Adler A; Qin X; Crowley JL; Englund JA; Kuypers JM; Jerome KR; Zerr DM<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28379561\">Rule-Out Outbreak: 24-Hour Metagenomic Next-Generation Sequencing for Characterizing Respiratory Virus Source for Infection Prevention.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Pediatric Infect Dis Soc<\/span> <span class = \"ip-vol\">6(2):168-172<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28209840\" data-year=\"2017\"><span class = \"ip-authors\"> Makhsous N; Shean RC; Droppers D; Guan J; Jerome KR; Greninger AL<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28209840\">Genome Sequences of Three Novel Bunyaviruses, Two Novel Rhabdoviruses, and One Novel Nyamivirus from Washington State Moths.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">5<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28100494\" data-year=\"2017\"><span class = \"ip-authors\"> Bateman AC; Greninger AL; Atienza EE; Limaye AP; Jerome KR; Cook L<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28100494\">Quantification of BK Virus Standards by Quantitative Real-Time PCR and Droplet Digital PCR Is Confounded by Multiple Virus Populations in the WHO BKV International Standard.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Chem<\/span> <span class = \"ip-vol\">63(3):761-769<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"27974546\" data-year=\"2017\"><span class = \"ip-authors\"> Greninger AL; Bateman AC; Atienza EE; Wendt S; Makhsous N; Jerome KR; Cook L<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27974546\">Copy Number Heterogeneity of JC Virus Standards.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">55(3):824-831<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"27795347\" data-year=\"2017\"><span class = \"ip-authors\"> Greninger AL; Zerr DM; Qin X; Adler AL; Sampoleo R; Kuypers JM; Englund JA; Jerome KR<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27795347\">Rapid Metagenomic Next-Generation Sequencing during an Investigation of Hospital-Acquired Human Parainfluenza Virus 3 Infections.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">55(1):177-182<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28360160\" data-year=\"2017\"><span class = \"ip-authors\"> Greninger AL; Streithorst J; Chiu CY; Miller S<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28360160\">First Complete Genome Sequence of Corynebacterium riegelii.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">5<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29281620\" data-year=\"2017\"><span class = \"ip-authors\"> Johnston C; Magaret A; Roychoudhury P; Greninger AL; Reeves D; Schiffer J; Jerome KR; Sather C; Diem K; Lingappa JR; Celum C; Koelle DM; Wald A<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29281620\">Dual-strain genital herpes simplex virus type 2 (HSV-2) infection in the US, Peru, and 8 countries in sub-Saharan Africa: A nested cross-sectional viral genotyping study.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS Med<\/span> <span class = \"ip-vol\">14(12):e1002475<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28425609\" data-year=\"2017\"><span class = \"ip-authors\"> Greninger AL; Hess JR<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28425609\">Clostridium perfringens sepsis masquerading as a hemolytic transfusion reaction.<\/a><\/span> &nbsp<span class = \"ip-journal\">Transfusion<\/span> <span class = \"ip-vol\">57(5):1112<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28592550\" data-year=\"2017\"><span class = \"ip-authors\"> Kozyreva VK; Truong CL; Greninger AL; Crandall J; Mukhopadhyay R; Chaturvedi V<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28592550\">Validation and Implementation of Clinical Laboratory Improvements Act-Compliant Whole-Genome Sequencing in the Public Health Microbiology Laboratory.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">55(8):2502-2520<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28711653\" data-year=\"2017\"><span class = \"ip-authors\"> Johnston C; Magaret A; Roychoudhury P; Greninger AL; Cheng A; Diem K; Fitzgibbon MP; Huang ML; Selke S; Lingappa JR; Celum C; Jerome KR; Wald A; Koelle DM<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28711653\">Highly conserved intragenic HSV-2 sequences: Results from next-generation sequencing of HSV-2 U(L) and U(S) regions from genital swabs collected from 3 continents.<\/a><\/span> &nbsp<span class = \"ip-journal\">Virology<\/span> <span class = \"ip-vol\">510:90-98<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28838146\" data-year=\"2017\"><span class = \"ip-authors\"> Ogimi C; Greninger AL; Waghmare AA; Kuypers JM; Shean RC; Xie H; Leisenring WM; Stevens-Ayers TL; Jerome KR; Englund JA; Boeckh M<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28838146\">Prolonged Shedding of Human Coronavirus in Hematopoietic Cell Transplant Recipients: Risk Factors and Viral Genome Evolution.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Infect Dis<\/span> <span class = \"ip-vol\">216(2):203-209<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28870221\" data-year=\"2017\"><span class = \"ip-authors\"> Makhsous N; Jensen NL; Haman KH; Batts WN; Jerome KR; Winton JR; Greninger AL<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28870221\">Isolation and characterization of the fall Chinook aquareovirus.<\/a><\/span> &nbsp<span class = \"ip-journal\">Virol J<\/span> <span class = \"ip-vol\">14(1):170<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28873986\" data-year=\"2017\"><span class = \"ip-authors\"> Niyonzima N; Lambert AR; Werther R; De Silva Feelixge H; Roychoudhury P; Greninger AL; Stone D; Stoddard BL; Jerome KR<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28873986\">Tuning DNA binding affinity and cleavage specificity of an engineered gene-targeting nuclease via surface display, flow cytometry and cellular analyses.<\/a><\/span> &nbsp<span class = \"ip-journal\">Protein Eng Des Sel<\/span> <span class = \"ip-vol\">30(7):503-522<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28935730\" data-year=\"2017\"><span class = \"ip-authors\"> Bateman AC; Perez-Osorio AC; Li Z; Tran M; Greninger AL<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28935730\">Conservation and Recombination in the Genome Sequence of Haemophilus influenzae Type f WAPHL1.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">5<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28948184\" data-year=\"2017\"><span class = \"ip-authors\"> Bajema KL; Simonson PD; Greninger AL; \u00c7oruh B; Pottinger PS; Bhattacharya R; Liou IW; Jalikis FG; Fligner CL; Rakita RM<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28948184\">Acute Liver Failure Due to Echovirus 9 Associated With Persistent B-Cell Depletion From Rituximab.<\/a><\/span> &nbsp<span class = \"ip-journal\">Open Forum Infect Dis<\/span> <span class = \"ip-vol\">4(3):ofx174<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28984546\" data-year=\"2017\"><span class = \"ip-authors\"> Paniz-Mondolfi AE; Greninger AL; Ladutko L; Brown-Elliott BA; Vasireddy R; Jakubiec W; Vasireddy S; Wallace RJ Jr; Simmon KE; Dunn BE; Jackoway G; Vora SB; Quinn KK; Qin X; Campbell S<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28984546\">Mycobacterium grossiae sp. nov., a rapidly growing, scotochromogenic species isolated from human clinical respiratory and blood culture specimens.<\/a><\/span> &nbsp<span class = \"ip-journal\">Int J Syst Evol Microbiol<\/span> <span class = \"ip-vol\">67(11):4345-4351<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"29263840\" data-year=\"2017\"><span class = \"ip-authors\"> Greninger AL; Pepper G; Shean RC; Cent A; Palileo I; Kuypers JM; Schiffer JT; Jerome KR<\/span>, <span class = \"ip-date\">2017<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29263840\">Myeloablation-associated deletion of ORF4 in a human coronavirus 229E infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">NPJ Genom Med<\/span> <span class = \"ip-vol\">2:30<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26621918\" data-year=\"2016\"><span class = \"ip-authors\"> Soupene E; Kao J; Cheng DH; Wang D; Greninger AL; Knudsen GM; DeRisi JL; Kuypers FA<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26621918\">Association of NMT2 with the acyl-CoA carrier ACBD6 protects the N-myristoyltransferase reaction from palmitoyl-CoA.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Lipid Res<\/span> <span class = \"ip-vol\">57(2):288-98<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26718067\" data-year=\"2016\"><span class = \"ip-authors\"> De Silva Feelixge HS; Stone D; Pietz HL; Roychoudhury P; Greninger AL; Schiffer JT; Aubert M; Jerome KR<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26718067\">Detection of treatment-resistant infectious HIV after genome-directed antiviral endonuclease therapy.<\/a><\/span> &nbsp<span class = \"ip-journal\">Antiviral Res<\/span> <span class = \"ip-vol\">126:90-8<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26890675\" data-year=\"2016\"><span class = \"ip-authors\"> Greninger AL; Chatterjee SS; Chan LC; Hamilton SM; Chambers HF; Chiu CY<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26890675\">Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Resistant to Fifth-Generation Cephalosporins Reveals Potential Non-mecA Mechanisms of Resistance.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS One<\/span> <span class = \"ip-vol\">11(2):e0149541<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26750923\" data-year=\"2016\"><span class = \"ip-authors\"> Greninger AL; Messacar K; Dunnebacke T; Naccache SN; Federman S; Bouquet J; Mirsky D; Nomura Y; Yagi S; Glaser C; Vollmer M; Press CA; Kleinschmidt-DeMasters BK; Dominguez SR; Chiu CY<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26750923\">Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Med<\/span> <span class = \"ip-vol\">8(1):1<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26829887\" data-year=\"2016\"><span class = \"ip-authors\"> Sedlak RH; Liang S; Niyonzima N; De Silva Feelixge HS; Roychoudhury P; Greninger AL; Weber ND; Boissel S; Scharenberg AM; Cheng A; Magaret A; Bumgarner R; Stone D; Jerome KR<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26829887\">Digital detection of endonuclease mediated gene disruption in the HIV provirus.<\/a><\/span> &nbsp<span class = \"ip-journal\">Sci Rep<\/span> <span class = \"ip-vol\">6:20064<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"27874833\" data-year=\"2016\"><span class = \"ip-authors\"> Greene TT; Tokuyama M; Knudsen GM; Kunz M; Lin J; Greninger AL; DeFilippis VR; DeRisi JL; Raulet DH; Coscoy L<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27874833\">A Herpesviral induction of RAE-1 NKG2D ligand expression occurs through release of HDAC mediated repression.<\/a><\/span> &nbsp<span class = \"ip-journal\">Elife<\/span> <span class = \"ip-vol\">5<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26941149\" data-year=\"2016\"><span class = \"ip-authors\"> Greninger AL; Jerome KR<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26941149\">Draft Genome Sequence of Goose Dicistrovirus.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">4<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"27642635\" data-year=\"2016\"><span class = \"ip-authors\"> Aubert M; Madden EA; Loprieno M; DeSilva Feelixge HS; Stensland L; Huang ML; Greninger AL; Roychoudhury P; Niyonzima N; Nguyen T; Magaret A; Galleto R; Stone D; Jerome KR<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27642635\">In vivo disruption of latent HSV by designer endonuclease therapy.<\/a><\/span> &nbsp<span class = \"ip-journal\">JCI Insight<\/span> <span class = \"ip-vol\">1<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"27834718\" data-year=\"2016\"><span class = \"ip-authors\"> Greninger AL; Streithorst J; Chiu CY; Miller S<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27834718\">First Draft Genome Sequences of Neisseria sp. Strain 83E34 and Neisseria sp. Strain 74A18, Previously Identified as CDC Eugonic Fermenter 4b Species.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">4<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"28028547\" data-year=\"2016\"><span class = \"ip-authors\"> Kozyreva VK; Jospin G; Greninger AL; Watt JP; Eisen JA; Chaturvedi V<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28028547\">Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations of Shigella sonnei with either Increased Virulence or Fluoroquinolone Resistance.<\/a><\/span> &nbsp<span class = \"ip-journal\">mSphere<\/span> <span class = \"ip-vol\">1<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"27448188\" data-year=\"2016\"><span class = \"ip-authors\"> Naccache SN; Th\u00e9z\u00e9 J; Sardi SI; Somasekar S; Greninger AL; Bandeira AC; Campos GS; Tauro LB; Faria NR; Pybus OG; Chiu CY<\/span>, <span class = \"ip-date\">2016<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27448188\">Distinct Zika Virus Lineage in Salvador, Bahia, Brazil.<\/a><\/span> &nbsp<span class = \"ip-journal\">Emerg Infect Dis<\/span> <span class = \"ip-vol\">22(10):1788-92<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26112785\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; DeRisi JL<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26112785\">Draft Genome Sequences of Leviviridae RNA Phages EC and MB Recovered from San Francisco Wastewater.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25355758\" data-year=\"2015\"><span class = \"ip-authors\"> Mart\u00ednez MA; Soto-Del R\u00edo Mde L; Guti\u00e9rrez RM; Chiu CY; Greninger AL; Contreras JF; L\u00f3pez S; Arias CF; Isa P<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25355758\">DNA microarray for detection of gastrointestinal viruses.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">53(1):136-45<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25595805\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25595805\">Picornavirus--host interactions to construct viral secretory membranes.<\/a><\/span> &nbsp<span class = \"ip-journal\">Prog Mol Biol Transl Sci<\/span> <span class = \"ip-vol\">129:189-212<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25837569\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Naccache SN; Messacar K; Clayton A; Yu G; Somasekar S; Federman S; Stryke D; Anderson C; Yagi S; Messenger S; Wadford D; Xia D; Watt JP; Van Haren K; Dominguez SR; Glaser C; Aldrovandi G; Chiu CY<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25837569\">A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study.<\/a><\/span> &nbsp<span class = \"ip-journal\">Lancet Infect Dis<\/span> <span class = \"ip-vol\">15(6):671-82<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25977423\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Chorny I; Knowles S; Ng VL; Chaturvedi V<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25977423\">Draft Genome Sequences of Four NDM-1-Producing Klebsiella pneumoniae Strains from a Health Care Facility in Northern California.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26067960\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Cunningham G; Hsu ED; Yu JM; Chiu CY; Miller S<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26067960\">Draft Genome Sequence of Mycobacterium obuense Strain UC1, Isolated from Patient Sputum.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26067970\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Cunningham G; Yu JM; Hsu ED; Chiu CY; Miller S<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26067970\">Draft Genome Sequence of Mycobacterium arupense Strain GUC1.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26089423\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; DeRisi JL<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26089423\">Draft Genome Sequences of Marine RNA Viruses SF-1, SF-2, and SF-3 Recovered from San Francisco Wastewater.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26112784\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; DeRisi JL<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26112784\">Draft Genome Sequences of Ciliovirus and Brinovirus from San Francisco Wastewater.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25926490\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Langelier C; Cunningham G; Keh C; Melgar M; Chiu CY; Miller S<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25926490\">Two Rapidly Growing Mycobacterial Species Isolated from a Brain Abscess: First Whole-Genome Sequences of Mycobacterium immunogenum and Mycobacterium llatzerense.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Clin Microbiol<\/span> <span class = \"ip-vol\">53(7):2374-7<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26112791\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Cunningham G; Yu JM; Hsu ED; Chiu CY; Miller S<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26112791\">Draft Genome Sequence of Mycobacterium elephantis Strain Lipa.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26139709\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; DeRisi JL<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26139709\">Draft Genome Sequence of Tombunodavirus UC1.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26139710\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; DeRisi JL<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26139710\">Draft Genome Sequence of Laverivirus UC1, a Dicistrovirus-Like RNA Virus Featuring an Unusual Genome Organization.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26205863\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Cunningham G; Chiu CY; Miller S<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26205863\">Draft Genome Sequence of Mycobacterium heraklionense Strain Davo.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26316632\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Cunningham G; Chiu CY; Miller S<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26316632\">Draft Genome Sequence of Mycobacterium heckeshornense Strain RLE.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26358603\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Kozyreva V; Truong CL; Longoria R; Chaturvedi V<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26358603\">Draft Genome Sequence of Kerstersia gyiorum CG1, Isolated from a Leg Ulcer.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26383669\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Kozyreva V; Truong CL; Graves M; Chaturvedi V<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26383669\">Draft Genome Sequence of Turicella otitidis TD1, Isolated from a Patient with Bacteremia.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26416663\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Naccache SN; Federman S; Yu G; Mbala P; Bres V; Stryke D; Bouquet J; Somasekar S; Linnen JM; Dodd R; Mulembakani P; Schneider BS; Muyembe-Tamfum JJ; Stramer SL; Chiu CY<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26416663\">Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Med<\/span> <span class = \"ip-vol\">7:99<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26620704\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; Messacar K; Dunnebacke T; Naccache SN; Federman S; Bouquet J; Mirsky D; Nomura Y; Yagi S; Glaser C; Vollmer M; Press CA; Kleinschmidt-DeMasters BK; Dominguez SR; Chiu CY<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26620704\">Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Med<\/span> <span class = \"ip-vol\">7:113<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"26139708\" data-year=\"2015\"><span class = \"ip-authors\"> Greninger AL; DeRisi JL<\/span>, <span class = \"ip-date\">2015<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26139708\">Draft Genome Sequence of Picalivirus D Recovered from San Francisco Wastewater.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Announc<\/span> <span class = \"ip-vol\">3<\/span>.<\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"25275790\" data-year=\"2014\"><span class = \"ip-authors\"> Morris JH; Knudsen GM; Verschueren E; Johnson JR; Cimermancic P; Greninger AL; Pico AR<\/span>, <span class = \"ip-date\">2014<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25275790\">Affinity purification-mass spectrometry and network analysis to understand protein-protein interactions.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Protoc<\/span> <span class = \"ip-vol\">9(11):2539-54<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"24899342\" data-year=\"2014\"><span class = \"ip-authors\"> Naccache SN; Federman S; Veeraraghavan N; Zaharia M; Lee D; Samayoa E; Bouquet J; Greninger AL; Luk KC; Enge B; Wadford DA; Messenger SL; Genrich GL; Pellegrino K; Grard G; Leroy E; Schneider BS; Fair JN; Mart\u00ednez MA; Isa P; Crump JA; DeRisi JL; Sittler T; Hackett J Jr; Miller S; Chiu CY<\/span>, <span class = \"ip-date\">2014<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24899342\">A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.<\/a><\/span> &nbsp<span class = \"ip-journal\">Genome Res<\/span> <span class = \"ip-vol\">24(7):1180-92<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"24314645\" data-year=\"2014\"><span class = \"ip-authors\"> Coffey LL; Page BL; Greninger AL; Herring BL; Russell RC; Doggett SL; Haniotis J; Wang C; Deng X; Delwart EL<\/span>, <span class = \"ip-date\">2014<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24314645\">Enhanced arbovirus surveillance with deep sequencing: Identification of novel rhabdoviruses and bunyaviruses in Australian mosquitoes.<\/a><\/span> &nbsp<span class = \"ip-journal\">Virology<\/span> <span class = \"ip-vol\">448:146-58<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"23360210\" data-year=\"2013\"><span class = \"ip-authors\"> Herman EK; Greninger AL; Visvesvara GS; Marciano-Cabral F; Dacks JB; Chiu CY<\/span>, <span class = \"ip-date\">2013<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23360210\">The mitochondrial genome and a 60-kb nuclear DNA segment from Naegleria fowleri, the causative agent of primary amoebic meningoencephalitis.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Eukaryot Microbiol<\/span> <span class = \"ip-vol\">60(2):179-91<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"24027301\" data-year=\"2013\"><span class = \"ip-authors\"> Naccache SN; Greninger AL; Lee D; Coffey LL; Phan T; Rein-Weston A; Aronsohn A; Hackett J Jr; Delwart EL; Chiu CY<\/span>, <span class = \"ip-date\">2013<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24027301\">The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">87(22):11966-77<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"23572552\" data-year=\"2013\"><span class = \"ip-authors\"> Greninger AL; Knudsen GM; Betegon M; Burlingame AL; DeRisi JL<\/span>, <span class = \"ip-date\">2013<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23572552\">ACBD3 interaction with TBC1 domain 22 protein is differentially affected by enteroviral and kobuviral 3A protein binding.<\/a><\/span> &nbsp<span class = \"ip-journal\">mBio<\/span> <span class = \"ip-vol\">4(2):e00098-13<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"23625967\" data-year=\"2013\"><span class = \"ip-authors\"> Nelson CS; Fuller CK; Fordyce PM; Greninger AL; Li H; DeRisi JL<\/span>, <span class = \"ip-date\">2013<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23625967\">Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nucleic Acids Res<\/span> <span class = \"ip-vol\">41(12):5991-6004<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"23166671\" data-year=\"2012\"><span class = \"ip-authors\"> Yu G; Greninger AL; Isa P; Phan TG; Mart\u00ednez MA; de la Luz Sanchez M; Contreras JF; Santos-Preciado JI; Parsonnet J; Miller S; DeRisi JL; Delwart E; Arias CF; Chiu CY<\/span>, <span class = \"ip-date\">2012<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23166671\">Discovery of a novel polyomavirus in acute diarrheal samples from children.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS One<\/span> <span class = \"ip-vol\">7(11):e49449<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"23023596\" data-year=\"2012\"><span class = \"ip-authors\"> O'Donoghue AJ; Eroy-Reveles AA; Knudsen GM; Ingram J; Zhou M; Statnekov JB; Greninger AL; Hostetter DR; Qu G; Maltby DA; Anderson MO; Derisi JL; McKerrow JH; Burlingame AL; Craik CS<\/span>, <span class = \"ip-date\">2012<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23023596\">Global identification of peptidase specificity by multiplex substrate profiling.<\/a><\/span> &nbsp<span class = \"ip-journal\">Nat Methods<\/span> <span class = \"ip-vol\">9(11):1095-100<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"22258260\" data-year=\"2012\"><span class = \"ip-authors\"> Greninger AL; Knudsen GM; Betegon M; Burlingame AL; Derisi JL<\/span>, <span class = \"ip-date\">2012<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22258260\">The 3A protein from multiple picornaviruses utilizes the golgi adaptor protein ACBD3 to recruit PI4KIII\u03b2.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">86(7):3605-16<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"20976137\" data-year=\"2010\"><span class = \"ip-authors\"> Greninger AL; Chen EC; Sittler T; Scheinerman A; Roubinian N; Yu G; Kim E; Pillai DR; Guyard C; Mazzulli T; Isa P; Arias CF; Hackett J; Schochetman G; Miller S; Tang P; Chiu CY<\/span>, <span class = \"ip-date\">2010<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20976137\">A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America.<\/a><\/span> &nbsp<span class = \"ip-journal\">PLoS One<\/span> <span class = \"ip-vol\">5(10):e13381<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"20739504\" data-year=\"2010\"><span class = \"ip-authors\"> Greninger AL; Holtz L; Kang G; Ganem D; Wang D; DeRisi JL<\/span>, <span class = \"ip-date\">2010<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20739504\">Serological evidence of human klassevirus infection.<\/a><\/span> &nbsp<span class = \"ip-journal\">Clin Vaccine Immunol<\/span> <span class = \"ip-vol\">17(10):1584-8<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"20164225\" data-year=\"2010\"><span class = \"ip-authors\"> Chiu CY; Greninger AL; Chen EC; Haggerty TD; Parsonnet J; Delwart E; Derisi JL; Ganem D<\/span>, <span class = \"ip-date\">2010<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20164225\">Cultivation and serological characterization of a human Theiler's-like cardiovirus associated with diarrheal disease.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">84(9):4407-14<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"19955301\" data-year=\"2010\"><span class = \"ip-authors\"> Kistler AL; Smith JM; Greninger AL; Derisi JL; Ganem D<\/span>, <span class = \"ip-date\">2010<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19955301\">Analysis of naturally occurring avian bornavirus infection and transmission during an outbreak of proventricular dilatation disease among captive psittacine birds.<\/a><\/span> &nbsp<span class = \"ip-journal\">J Virol<\/span> <span class = \"ip-vol\">84(4):2176-9<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"19589169\" data-year=\"2009\"><span class = \"ip-authors\"> Gancz AY; Kistler AL; Greninger AL; Farnoushi Y; Mechani S; Perl S; Berkowitz A; Perez N; Clubb S; DeRisi JL; Ganem D; Lublin A<\/span>, <span class = \"ip-date\">2009<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19589169\">Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4.<\/a><\/span> &nbsp<span class = \"ip-journal\">Virol J<\/span> <span class = \"ip-vol\">6:100<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"19538752\" data-year=\"2009\"><span class = \"ip-authors\"> Greninger AL; Runckel C; Chiu CY; Haggerty T; Parsonnet J; Ganem D; DeRisi JL<\/span>, <span class = \"ip-date\">2009<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/19538752\">The complete genome of klassevirus - a novel picornavirus in pediatric stool.<\/a><\/span> &nbsp<span class = \"ip-journal\">Virol J<\/span> <span class = \"ip-vol\">6:82<\/span><\/p><p class=\"ip-badges\"><\/p><p class=\"impactpubs_publication impactpubs_notshown\" id=\"18768820\" data-year=\"2008\"><span class = \"ip-authors\"> Chiu CY; Greninger AL; Kanada K; Kwok T; Fischer KF; Runckel C; Louie JK; Glaser CA; Yagi S; Schnurr DP; Haggerty TD; Parsonnet J; Ganem D; DeRisi JL<\/span>, <span class = \"ip-date\">2008<\/span>. <span class = \"ip-title\"><a href = \"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18768820\">Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections.<\/a><\/span> &nbsp<span class = \"ip-journal\">Proc Natl Acad Sci U S A<\/span> <span class = \"ip-vol\">105(37):14124-9<\/span><\/p><p class=\"ip-badges\"><\/p><p class = \"impactpubs-footnote\">Publication list retrieved from <a href = \"http:\/\/www.ncbi.nlm.nih.gov\/books\/NBK25500\/\">NCBI<\/a> using <a href = \"https:\/\/wordpress.org\/plugins\/impactpubs\/\">ImpactPubs<\/a><\/p>.\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"_links":{"self":[{"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/pages\/897"}],"collection":[{"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/comments?post=897"}],"version-history":[{"count":17,"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/pages\/897\/revisions"}],"predecessor-version":[{"id":975,"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/pages\/897\/revisions\/975"}],"wp:attachment":[{"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/media?parent=897"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}