{"id":899,"date":"2024-05-31T01:11:28","date_gmt":"2024-05-31T01:11:28","guid":{"rendered":"https:\/\/depts.washington.edu\/uwvirus\/?page_id=899"},"modified":"2024-05-31T07:37:37","modified_gmt":"2024-05-31T07:37:37","slug":"software","status":"publish","type":"page","link":"https:\/\/depts.washington.edu\/uwvirus\/software\/","title":{"rendered":"Software"},"content":{"rendered":"\n<p><a href=\"https:\/\/github.com\/greninger-lab\/revica\" target=\"_blank\" rel=\"noreferrer noopener\"><\/a><\/p>\n\n\n\n<h6 class=\"wp-block-heading has-text-align-center has-background-color has-accent-background-color has-text-color has-background has-link-color wp-elements-5cfa7807cdd59b13f60644a88c7337cc\"><a href=\"https:\/\/github.com\/greninger-lab\/revica\" target=\"_blank\" rel=\"noreferrer noopener\">REVICA<\/a><\/h6>\n\n\n\n<p class=\"has-text-align-center has-primary-color has-subtle-background-background-color has-text-color has-background has-link-color wp-elements-fdc4205a83cfc6017aa9d4f3a08a72f2\"><a href=\"https:\/\/github.com\/greninger-lab\/revica\" target=\"_blank\" rel=\"noreferrer noopener\">Revica is a reference-based viral consensus genome assembly pipeline for some of the most common respiratory viruses.<\/a><a href=\"https:\/\/github.com\/greninger-lab\/revica\" target=\"_blank\" rel=\"noreferrer noopener\"><\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/github.com\/greninger-lab\/lava\" target=\"_blank\" rel=\"noreferrer noopener\"><\/a><\/p>\n\n\n\n<h6 class=\"wp-block-heading has-text-align-center has-background-color has-accent-background-color has-text-color has-background has-link-color wp-elements-f55c1bd539926276afe087873af36c71\"><a href=\"https:\/\/github.com\/greninger-lab\/lava\" target=\"_blank\" rel=\"noreferrer noopener\">RAVA<\/a><\/h6>\n\n\n\n<p class=\"has-text-align-center has-primary-color has-subtle-background-background-color has-text-color has-background has-link-color wp-elements-c87ebefe832dcbb5025603da87084226\"><a href=\"https:\/\/github.com\/greninger-lab\/RAVA_Pipeline\" target=\"_blank\" rel=\"noreferrer noopener\">RAVA is a simple command-line tool that allows dynamic and interactive visualization of viral genome evolution from longitudinal or linked samples. RAVA addresses the specific challenges posed by longitudinal sampling for viral infections.<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/github.com\/greninger-lab\/VAPiD\" target=\"_blank\" rel=\"noreferrer noopener\"><\/a><\/p>\n\n\n\n<h6 class=\"wp-block-heading has-text-align-center has-background-color has-accent-background-color has-text-color has-background has-link-color wp-elements-b5ae45b760354ed731008f2506bce82b\"><a href=\"https:\/\/github.com\/greninger-lab\/VAPiD\" target=\"_blank\" rel=\"noreferrer noopener\">VAPID<\/a><\/h6>\n\n\n\n<p class=\"has-text-align-center has-primary-color has-subtle-background-background-color has-text-color has-background has-link-color wp-elements-3e02fe602326cf4ad0ce68c297140471\"><a href=\"https:\/\/github.com\/greninger-lab\/VAPiD\" target=\"_blank\" rel=\"noreferrer noopener\">VAPiD is a portable and lightweight command-line tool that supports annotation and NCBI GenBank deposition of nearly all unsegmented viral genomes. Instructions for downloading and installing VAPiD can be found at Github.<\/a><a href=\"https:\/\/github.com\/greninger-lab\/VAPiD\" target=\"_blank\" rel=\"noreferrer noopener\"><\/a><\/p>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter is-resized wp-duotone-unset-1\"><a href=\"https:\/\/github.com\/greninger-lab\" target=\"_blank\" rel=\"noreferrer noopener\"><img decoding=\"async\" src=\"https:\/\/greninger-lab.github.io\/bxl-github.svg\" alt=\"More programs hosted on our github.\" style=\"object-fit:cover;width:250px;height:250px\"\/><\/a><\/figure><\/div>\n\n\n<h6 class=\"wp-block-heading has-text-align-center has-background-color has-accent-background-color has-text-color has-background has-link-color has-small-font-size wp-elements-cc5aaeba1a69331430ae1e9feab1637d\"><a href=\"https:\/\/github.com\/greninger-lab\" data-type=\"link\" data-id=\"https:\/\/github.com\/greninger-lab\">Github<\/a><\/h6>\n\n\n\n<p class=\"has-text-align-center has-primary-color has-subtle-background-background-color has-text-color has-background has-link-color wp-elements-96d3c1eee85eb39dcc423588503dc291\"><a href=\"https:\/\/github.com\/greninger-lab\">More programs hosted on our github!<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>REVICA Revica is a reference-based viral consensus genome assembly pipeline for some of the most common respiratory viruses. RAVA RAVA is a simple command-line tool that allows dynamic and interactive visualization of viral genome evolution from longitudinal or linked samples. RAVA addresses the specific challenges posed by longitudinal sampling for viral infections. VAPID VAPiD is [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"_links":{"self":[{"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/pages\/899"}],"collection":[{"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/comments?post=899"}],"version-history":[{"count":7,"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/pages\/899\/revisions"}],"predecessor-version":[{"id":949,"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/pages\/899\/revisions\/949"}],"wp:attachment":[{"href":"https:\/\/depts.washington.edu\/uwvirus\/wp-json\/wp\/v2\/media?parent=899"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}