Difference between revisions of "Data Organization"
From Brain Development & Education Lab Wiki
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==MRI== | ==MRI== | ||
Within /mnt/diskArray/projects/MRI:<br> | Within /mnt/diskArray/projects/MRI:<br> | ||
| − | NLR_###_FL —Parent<br> | + | '''NLR_###_FL''' —Parent<br> |
| − | : | + | :'''YYYYMMDD'''—Scan Date<br> |
| − | ::*. | + | ::'''*.PAR'''—Raw data<br> |
| − | ::*.REC<br> | + | ::'''*.REC'''<br> |
| − | ::*.nii —Converted nifty images<br> | + | ::'''*.nii '''—Converted nifty images<br> |
| − | ::*MSE.nii. | + | ::'''*MSE.nii.gz'''—Root mean squared image<br> |
==Anatomy== | ==Anatomy== | ||
Revision as of 21:56, 3 December 2015
In the server, the nomenclature for file naming is as follows. This will allow for ease in adapting to the naming structures within Freesurfer, but also will provide a stable system by which we can keep all of the longitudinal data organized and clear.
MRI
Within /mnt/diskArray/projects/MRI:
NLR_###_FL —Parent
- YYYYMMDD—Scan Date
- *.PAR—Raw data
- *.REC
- *.nii —Converted nifty images
- *MSE.nii.gz—Root mean squared image
- *.PAR—Raw data
Anatomy
Within /mnt/diskArray/projects/anatomy:
NLR_###_FL—AC-PC aligned, longitudinal average
- t1_acpc.nii.gz
NLR_###_FL_MR#—AC-PC aligned, individual scan
- t1_acpc.nii.gz
Freesurfer
Within /mnt/diskArray/projects/freesurfer:
NLR_###_FL_MR# —Individual Segmentation
NLR_###_FL_MR#.long.NLR_###_FL_MRbase —Longitudinal base comp for ea scan
NLR_###_FL_MRbase —Base average segmentation
qdec —Longitudinal data storage
- long.qdec.table.dat —data table
