Difference between revisions of "Data Organization"
From Brain Development & Education Lab Wiki
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==MRI== | ==MRI== | ||
Within /mnt/diskArray/projects/MRI:<br> | Within /mnt/diskArray/projects/MRI:<br> | ||
| − | NLR_###_FL —Parent<br> | + | '''NLR_###_FL''' —Parent<br> |
| − | : | + | :'''YYYYMMDD'''—Scan Date<br> |
| − | ::*. | + | ::'''*.PAR'''—Raw data<br> |
| − | ::*.REC<br> | + | ::'''*.REC'''<br> |
| − | ::*.nii —Converted nifty images<br> | + | ::'''*.nii '''—Converted nifty images<br> |
| − | ::*MSE.nii. | + | ::'''*MSE.nii.gz'''—Root mean squared image<br> |
==Anatomy== | ==Anatomy== | ||
Within /mnt/diskArray/projects/anatomy:<br> | Within /mnt/diskArray/projects/anatomy:<br> | ||
| − | NLR_### | + | '''NLR_###_FL'''<br> |
| − | :t1_acpc.nii.gz<br> | + | :'''t1_acpc.nii.gz'''—AC-PC aligned, longitudinal average<br> |
| − | NLR_###_FL_MR# | + | '''NLR_###_FL_MR#'''<br> |
| − | :t1_acpc.nii.gz<br> | + | :'''t1_acpc.nii.gz'''—AC-PC aligned, individual scan<br> |
==Freesurfer== | ==Freesurfer== | ||
Within /mnt/diskArray/projects/freesurfer:<br> | Within /mnt/diskArray/projects/freesurfer:<br> | ||
| − | NLR_###_FL_MR# —Individual Segmentation<br> | + | :'''NLR_###_FL_MR#''' —Individual Segmentation<br> |
| − | NLR_###_FL_MR#.long.NLR_###_FL_MRbase —Longitudinal base comp for ea scan<br> | + | :'''NLR_###_FL_MR#.long.NLR_###_FL_MRbase''' —Longitudinal base comp for ea scan<br> |
| − | NLR_###_FL_MRbase —Base average segmentation<br> | + | :'''NLR_###_FL_MRbase''' —Base average segmentation<br> |
| − | qdec —Longitudinal data storage<br> | + | :'''qdec''' —Longitudinal data storage<br> |
| − | :long.qdec.table.dat —data table<br> | + | ::'''long.qdec.table.dat''' —data table<br> |
Latest revision as of 22:01, 3 December 2015
In the server, the nomenclature for file naming is as follows. This will allow for ease in adapting to the naming structures within Freesurfer, but also will provide a stable system by which we can keep all of the longitudinal data organized and clear.
MRI
Within /mnt/diskArray/projects/MRI:
NLR_###_FL —Parent
- YYYYMMDD—Scan Date
- *.PAR—Raw data
- *.REC
- *.nii —Converted nifty images
- *MSE.nii.gz—Root mean squared image
- *.PAR—Raw data
Anatomy
Within /mnt/diskArray/projects/anatomy:
NLR_###_FL
- t1_acpc.nii.gz—AC-PC aligned, longitudinal average
NLR_###_FL_MR#
- t1_acpc.nii.gz—AC-PC aligned, individual scan
Freesurfer
Within /mnt/diskArray/projects/freesurfer:
- NLR_###_FL_MR# —Individual Segmentation
- NLR_###_FL_MR#.long.NLR_###_FL_MRbase —Longitudinal base comp for ea scan
- NLR_###_FL_MRbase —Base average segmentation
- qdec —Longitudinal data storage
- long.qdec.table.dat —data table
- long.qdec.table.dat —data table
