Difference between revisions of "Data Organization"
From Brain Development & Education Lab Wiki
(→MRI) |
(→MRI) |
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Within /mnt/diskArray/projects/MRI:<br> | Within /mnt/diskArray/projects/MRI:<br> | ||
NLR_###_FL —Parent<br> | NLR_###_FL —Parent<br> | ||
| − | : | + | :YYYYMMDD—Scan Date<br> |
| − | ::*. | + | ::*.PAR—Raw data<br> |
::*.REC<br> | ::*.REC<br> | ||
| − | ::*.nii | + | ::*.nii —Converted nifty images<br> |
| − | ::*MSE.nii. | + | ::*MSE.nii.gz—Root mean squared image<br> |
| − | Anatomy: | + | ==Anatomy== |
| + | Within /mnt/diskArray/projects/anatomy:<br> | ||
| + | NLR_###_FL—AC-PC aligned, longitudinal average<br> | ||
| + | :t1_acpc.nii.gz<br> | ||
| + | NLR_###_FL_MR#—AC-PC aligned, individual scan<br> | ||
| + | :t1_acpc.nii.gz<br> | ||
| − | + | ==Freesurfer== | |
| − | + | Within /mnt/diskArray/projects/freesurfer:<br> | |
| − | + | NLR_###_FL_MR# —Individual Segmentation<br> | |
| − | + | NLR_###_FL_MR#.long.NLR_###_FL_MRbase —Longitudinal base comp for ea scan<br> | |
| − | + | NLR_###_FL_MRbase —Base average segmentation<br> | |
| − | + | qdec —Longitudinal data storage<br> | |
| − | + | :long.qdec.table.dat —data table<br> | |
| − | NLR_###_FL_MR# —Individual Segmentation | + | |
| − | NLR_###_FL_MR#.long.NLR_###_FL_MRbase —Longitudinal base comp for ea scan | + | |
| − | NLR_###_FL_MRbase —Base average segmentation | + | |
| − | qdec —Longitudinal data storage | + | |
| − | + | ||
Revision as of 21:55, 3 December 2015
In the server, the nomenclature for file naming is as follows. This will allow for ease in adapting to the naming structures within Freesurfer, but also will provide a stable system by which we can keep all of the longitudinal data organized and clear.
MRI
Within /mnt/diskArray/projects/MRI:
NLR_###_FL —Parent
- YYYYMMDD—Scan Date
- .PAR—Raw data
- .REC
- .nii —Converted nifty images
- MSE.nii.gz—Root mean squared image
- .PAR—Raw data
Anatomy
Within /mnt/diskArray/projects/anatomy:
NLR_###_FL—AC-PC aligned, longitudinal average
- t1_acpc.nii.gz
NLR_###_FL_MR#—AC-PC aligned, individual scan
- t1_acpc.nii.gz
Freesurfer
Within /mnt/diskArray/projects/freesurfer:
NLR_###_FL_MR# —Individual Segmentation
NLR_###_FL_MR#.long.NLR_###_FL_MRbase —Longitudinal base comp for ea scan
NLR_###_FL_MRbase —Base average segmentation
qdec —Longitudinal data storage
- long.qdec.table.dat —data table
