Difference between revisions of "Data Organization"
From Brain Development & Education Lab Wiki
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==Anatomy== | ==Anatomy== | ||
Within /mnt/diskArray/projects/anatomy:<br> | Within /mnt/diskArray/projects/anatomy:<br> | ||
| − | NLR_### | + | '''NLR_###_FL'''—AC-PC aligned, longitudinal average<br> |
| − | :t1_acpc.nii.gz<br> | + | :'''t1_acpc.nii.gz'''<br> |
| − | NLR_###_FL_MR#—AC-PC aligned, individual scan<br> | + | '''NLR_###_FL_MR#'''—AC-PC aligned, individual scan<br> |
| − | :t1_acpc.nii.gz<br> | + | :'''t1_acpc.nii.gz'''<br> |
==Freesurfer== | ==Freesurfer== | ||
Within /mnt/diskArray/projects/freesurfer:<br> | Within /mnt/diskArray/projects/freesurfer:<br> | ||
| − | NLR_###_FL_MR# —Individual Segmentation<br> | + | '''NLR_###_FL_MR#''' —Individual Segmentation<br> |
| − | NLR_###_FL_MR#.long.NLR_###_FL_MRbase —Longitudinal base comp for ea scan<br> | + | '''NLR_###_FL_MR#.long.NLR_###_FL_MRbase''' —Longitudinal base comp for ea scan<br> |
| − | NLR_###_FL_MRbase —Base average segmentation<br> | + | '''NLR_###_FL_MRbase''' —Base average segmentation<br> |
| − | qdec —Longitudinal data storage<br> | + | '''qdec''' —Longitudinal data storage<br> |
| − | :long.qdec.table.dat —data table<br> | + | :'''long.qdec.table.dat''' —data table<br> |
Revision as of 21:59, 3 December 2015
In the server, the nomenclature for file naming is as follows. This will allow for ease in adapting to the naming structures within Freesurfer, but also will provide a stable system by which we can keep all of the longitudinal data organized and clear.
MRI
Within /mnt/diskArray/projects/MRI:
NLR_###_FL —Parent
- YYYYMMDD—Scan Date
- *.PAR—Raw data
- *.REC
- *.nii —Converted nifty images
- *MSE.nii.gz—Root mean squared image
- *.PAR—Raw data
Anatomy
Within /mnt/diskArray/projects/anatomy:
NLR_###_FL—AC-PC aligned, longitudinal average
- t1_acpc.nii.gz
NLR_###_FL_MR#—AC-PC aligned, individual scan
- t1_acpc.nii.gz
Freesurfer
Within /mnt/diskArray/projects/freesurfer:
NLR_###_FL_MR# —Individual Segmentation
NLR_###_FL_MR#.long.NLR_###_FL_MRbase —Longitudinal base comp for ea scan
NLR_###_FL_MRbase —Base average segmentation
qdec —Longitudinal data storage
- long.qdec.table.dat —data table
