Difference between revisions of "Software Setup"
From Brain Development & Education Lab Wiki
(Created page with "We rely on a number of different software packages to analyze MRI and MEG data. Here is a growing tally of what we use and where to get it. Most of these tools reside on githu...") |
|||
| Line 13: | Line 13: | ||
apt-get install python-nibabel | apt-get install python-nibabel | ||
or pip | or pip | ||
| − | + | pip install nibabel | |
Revision as of 01:30, 3 November 2015
We rely on a number of different software packages to analyze MRI and MEG data. Here is a growing tally of what we use and where to get it. Most of these tools reside on github and you should definitely use git to clone the repositories rather than download a snapshot of the code. e.g.
git clone https://github.com/yeatmanlab/mritools.git
Yeatman Lab Tools
https://github.com/yeatmanlab/mritools
Vistasoft
MATLAB based toolbox, from Brian Wandell's lab at Stanford, that contains many functions we rely on for analyzing diffusion MRI and functional MRI data
https://github.com/vistalab/vistasoft
Automated Fiber Quantification
https://github.com/jyeatman/AFQ
nibabel
Python based toolbox for dealing with nifti images. While nibabel is on github we suggest installing using apt-get:
apt-get update apt-get install python-nibabel
or pip
pip install nibabel
