Difference between revisions of "Data Organization"
From Brain Development & Education Lab Wiki
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==Anatomy== | ==Anatomy== | ||
Within /mnt/diskArray/projects/anatomy:<br> | Within /mnt/diskArray/projects/anatomy:<br> | ||
| − | '''NLR_###_FL''' | + | '''NLR_###_FL'''<br> |
| − | :'''t1_acpc.nii.gz'''<br> | + | :'''t1_acpc.nii.gz'''—AC-PC aligned, longitudinal average<br> |
| − | '''NLR_###_FL_MR#''' | + | '''NLR_###_FL_MR#'''<br> |
| − | :'''t1_acpc.nii.gz'''<br> | + | :'''t1_acpc.nii.gz'''—AC-PC aligned, individual scan<br> |
==Freesurfer== | ==Freesurfer== | ||
Revision as of 22:00, 3 December 2015
In the server, the nomenclature for file naming is as follows. This will allow for ease in adapting to the naming structures within Freesurfer, but also will provide a stable system by which we can keep all of the longitudinal data organized and clear.
MRI
Within /mnt/diskArray/projects/MRI:
NLR_###_FL —Parent
- YYYYMMDD—Scan Date
- *.PAR—Raw data
- *.REC
- *.nii —Converted nifty images
- *MSE.nii.gz—Root mean squared image
- *.PAR—Raw data
Anatomy
Within /mnt/diskArray/projects/anatomy:
NLR_###_FL
- t1_acpc.nii.gz—AC-PC aligned, longitudinal average
NLR_###_FL_MR#
- t1_acpc.nii.gz—AC-PC aligned, individual scan
Freesurfer
Within /mnt/diskArray/projects/freesurfer:
NLR_###_FL_MR# —Individual Segmentation
NLR_###_FL_MR#.long.NLR_###_FL_MRbase —Longitudinal base comp for ea scan
NLR_###_FL_MRbase —Base average segmentation
qdec —Longitudinal data storage
- long.qdec.table.dat —data table
