MEG Data Acquisition

1. After running freesurfer on a subject's T1 anatomy we next need to create a BEM model.

 cd /home/jyeatman/git/mnefun/bin
 python run_mne_bem.py --subject NLR_201_GS --layers 1 --overwrite

2. Coordinate alignment.

 mne_analyze

File -> Load Surface -> Select Inflated File -> Load Digitizer Data -> sss_fif -> select any raw file Adjust -> Coordinate Alignment View -> Show viewer Click Options -> check Digitizer Data and HPI and landmarks only, Click each Fiducial location and then click "Align using fiducials" Save Default Make a "trans" folder within the subject's directory Move transform file and rename subj-trans.fif

2. To visualize source localized data

mne_analyze

3. File -> Load Surface -> Select Inflated

4. File-> Open

To adjust sensor plots: Adjust -> Scales To adjust source visualization: Adjust -> Estimates