Main Page: Difference between revisions
No edit summary |
|||
| Line 1: | Line 1: | ||
<big>''' | <big>'''CHARGE Consortium Wiki''' ('''C'''ohorts for '''H'''eart and '''A'''ging '''R'''esearch in '''G'''enomic '''E'''pidemiology)</big> | ||
== Getting started == | == Getting started == | ||
Unlike the [http://www.chargeconsortium.com CHARGE Consortium Public Website], this wiki requires a username and password to view most pages. To gain access, please fill-out the [[Special:RequestAccount|Request Account]] form; new user requests are reviewed by the [[RSC|Research Steering Committee]] approximately twice per month. | Unlike the [http://www.chargeconsortium.com CHARGE Consortium Public Website], this wiki requires a username and password to view most pages. To gain access, please fill-out the [[Special:RequestAccount|Request Account]] form; new user requests are reviewed by the [[RSC|Research Steering Committee]] approximately twice per month. | ||
Once logged in, you can edit existing pages or [[New Page|Create a new page]]. Wikipedia has a nice [http://en.wikipedia.org/wiki/Wikipedia:Tutorial tutorial] on how to edit pages. | Once logged in, you can edit existing pages or [[New Page|Create a new page]]. Wikipedia has a nice [http://en.wikipedia.org/wiki/Wikipedia:Tutorial tutorial] on how to edit pages. | ||
== Consortium Documents (public, no login required) == | == Consortium Documents (public, no login required) == | ||
*[[ChargePrinciples|CHARGE Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_Consortium-02-01-2008.pdf pdf]) : Principles for collaboration in the consortium, approved Jan 2008 by founding cohorts. | *[[ChargePrinciples|CHARGE Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_Consortium-02-01-2008.pdf pdf]) : Principles for collaboration in the consortium, approved Jan 2008 by founding cohorts. | ||
*[[ChargeWorkingGroupPrinciples|CHARGE Working Group Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_WGConsortium-02-01-2008.pdf pdf]) : Principles for collaboration in CHARGE working groups, new participants in working groups or CHARGE projects are asked to review and agree to these principles before joining. | *[[ChargeWorkingGroupPrinciples|CHARGE Working Group Principles]] ([http://depts.washington.edu/chargeco/docs/CHARGE_WGConsortium-02-01-2008.pdf pdf]) : Principles for collaboration in CHARGE working groups, new participants in working groups or CHARGE projects are asked to review and agree to these principles before joining. | ||
*[[DataSharingPrinciples|Aggregate Results-Sharing Principles]] : Guidelines for sharing results of GWAS, for participation in working groups and collaborative meta-analyses. | *[[DataSharingPrinciples|Aggregate Results-Sharing Principles]] : Guidelines for sharing results of GWAS, for participation in working groups and collaborative meta-analyses. | ||
*[[ResultsSharingFormat|Results Sharing Format]] : file format guidelines for sharing of aggregate results for meta-analysis. | *[[ResultsSharingFormat|Results Sharing Format]] : file format guidelines for sharing of aggregate results for meta-analysis. | ||
== Committees & Working Groups == | == Committees & Working Groups == | ||
*[[RSC|Research Steering Committee]]: Membership and minutes | *[[RSC|Research Steering Committee]]: Membership and minutes | ||
*[[Analysis subcomittee|Analysis Subcommittee]]: Resources and references for doing analyses, and minutes of analysis calls | *[[Analysis subcomittee|Analysis Subcommittee]]: Resources and references for doing analyses, and minutes of analysis calls | ||
*[http://depts.washington.edu/chargeco/wiki/CHARGE-S CHARGE-S PAGE] : The CHARGE Sequencing GWAS follow-up project | *[http://depts.washington.edu/chargeco/wiki/CHARGE-S CHARGE-S PAGE] : The CHARGE Sequencing GWAS follow-up project | ||
*[[WorkingGroups|Working Groups]]: Directory of phenotype working groups | *[[WorkingGroups|Working Groups]]: Directory of phenotype working groups | ||
*[[ResultsSharing|Results Sharing]]: Listing of file-sharing sites for each Working Group and contributing study, and details about CHARGE results sharing protocols | *[[ResultsSharing|Results Sharing]]: Listing of file-sharing sites for each Working Group and contributing study, and details about CHARGE results sharing protocols | ||
== Consortium Information == | == Consortium Information == | ||
*[http://www.chargeconsortium.com/ CHARGE Consortium] : Public consortium website | *[http://www.chargeconsortium.com/ CHARGE Consortium] : Public consortium website | ||
*[[Logos]] : versions of the CHARGE Tiger, with some explanations of its origins. | *[[Logos]] : versions of the CHARGE Tiger, with some explanations of its origins. | ||
*[[ConsortiumOverview|Consortium Overview]]: Overview for each cohort's genotyping, imputation, and funding acknowledgements. | *[[ConsortiumOverview|Consortium Overview]]: Overview for each cohort's genotyping, imputation, and funding acknowledgements. | ||
*[[Serve E-mail Charge Newsletters|CHARGE Newsletters]]: Archive of the newsletters sent to everyone with a wiki account | *[[Serve E-mail Charge Newsletters|CHARGE Newsletters]]: Archive of the newsletters sent to everyone with a wiki account | ||
*[[Grant Information and Updates|Grant information]]: Updates on CHARGE grant submissions | *[[Grant Information and Updates|Grant information]]: Updates on CHARGE grant submissions | ||
*'''CHARGE Publications:''' Last updated November 2010 ([http://depts.washington.edu/chargeco/wiki/cgi_img_auth.php/c/c7/Image_CHARGE_Publicaitons_11-03-10.pdf spreadsheet]; [http://depts.washington.edu/chargeco/wiki/cgi_img_auth.php/a/a7/Image_72_SHARe_CHARGE_Publications_11-02-10.pdf PDF PubMed format]) | *'''CHARGE Publications:''' Last updated November 2010 ([http://depts.washington.edu/chargeco/wiki/cgi_img_auth.php/c/c7/Image_CHARGE_Publicaitons_11-03-10.pdf spreadsheet]; [http://depts.washington.edu/chargeco/wiki/cgi_img_auth.php/a/a7/Image_72_SHARe_CHARGE_Publications_11-02-10.pdf PDF PubMed format]) | ||
'''Methods paper:''' Psaty BM, O'Donnell CJ, Gudnason V, Lunetta KL, Folsom AR, Rotter J.L., Uitterlinden AG, Harris TB, Witteman JCM, Boerwinkle E, on behalf of the CHARGE Consortium. Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium: Design of prospective meta-analyses of genome-wide association studies from five cohorts. Circ Cardiovasc Genet. 2009;2:73-80. | '''Methods paper:''' Psaty BM, O'Donnell CJ, Gudnason V, Lunetta KL, Folsom AR, Rotter J.L., Uitterlinden AG, Harris TB, Witteman JCM, Boerwinkle E, on behalf of the CHARGE Consortium. Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium: Design of prospective meta-analyses of genome-wide association studies from five cohorts. Circ Cardiovasc Genet. 2009;2:73-80. | ||
== Investigator Meetings == | == Investigator Meetings == | ||
| Line 38: | Line 38: | ||
==== [https://resweb.passkey.com/Resweb.do?mode=welcome_gi_new&groupID=3580400 Los Angeles/Redondo Beach, CA meeting: October 26-28 2011] ==== | ==== [https://resweb.passkey.com/Resweb.do?mode=welcome_gi_new&groupID=3580400 Los Angeles/Redondo Beach, CA meeting: October 26-28 2011] ==== | ||
The 2011 Fall CHARGE Investigator Meeting, hosted by the University of Washington and Cedars-Sinai Medical Center will be held at the [https://resweb.passkey.com/Resweb.do?mode=welcome_gi_new&groupID=3580400 Crowne Plaza Redondo Beach and Marina Hote]l 300 N. Harbor Drive | Redondo Beach, CA 90277 on October 26-28, 2011. | The 2011 Fall CHARGE Investigator Meeting, hosted by the University of Washington and Cedars-Sinai Medical Center will be held at the [https://resweb.passkey.com/Resweb.do?mode=welcome_gi_new&groupID=3580400 Crowne Plaza Redondo Beach and Marina Hote]l 300 N. Harbor Drive | Redondo Beach, CA 90277 on October 26-28, 2011. | ||
Hotel reservations at'''1-888-233-9527 '''or online [https://resweb.passkey.com/Resweb.do?mode=welcome_gi_new&groupID=3580400 at the CHARGE Registration page] . A block of rooms has been reserved for the 2011 Fall CHARGE Investigator Meeting at the rate of $149.00 (+tax) per night. | Hotel reservations at'''1-888-233-9527 '''or online [https://resweb.passkey.com/Resweb.do?mode=welcome_gi_new&groupID=3580400 at the CHARGE Registration page] . A block of rooms has been reserved for the 2011 Fall CHARGE Investigator Meeting at the rate of $149.00 (+tax) per night. | ||
[http://depts.washington.edu/chargeco/wiki/cgi_img_auth.php/8/85/Abstract_Submission_guidelines_LA_f_.pdf Abstract/Poster Guidelines Deadline extended to October 14] | [http://depts.washington.edu/chargeco/wiki/cgi_img_auth.php/8/85/Abstract_Submission_guidelines_LA_f_.pdf Abstract/Poster Guidelines Deadline extended to October 14] | ||
<br>[http://depts.washington.edu/chargeco/wiki/cgi_img_auth.php/9/9c/CHARGE_LA_Agenda_10-7-11.pdf '''Draft CHARGE LA Investigator meeting Agenda as of 10/7/11''']<br> | |||
[[Image:Abstract_Submission_guidelines_LA_f_.pdf|Abstract Submission Guidelines]] | |||
<u></u> | <u></u> | ||
<u>Wednesday October 26, 2011</u> | <u>Wednesday October 26, 2011</u> | ||
[http://depts.washington.edu/chargeco/wiki/cgi_img_auth.php/a/a5/Image_Adiposity_WG_meeting_10-26_Agenda.pdf Adiposity WG Agenda] | [http://depts.washington.edu/chargeco/wiki/cgi_img_auth.php/a/a5/Image_Adiposity_WG_meeting_10-26_Agenda.pdf Adiposity WG Agenda] | ||
The Adiposity WG will hold a one-day meeting on Wednesday Oct 26 from 9:00 – 5:00 pm PT in conjunction with the CHARGE LA| Redondo Beach Investigator meeting. The Adiposity meeting is opened to all CHARGE investigators and meeting participants, and will be held at the same venue as the main meeting, the Crowne Plaza Redondo Beach and Marina Hotel. Please note registration is requested as lunch and refreshments will be served (register via the main CHARGE meeting registration web page– currently under construction). An agenda will be available prior to the meeting and will include project updates, methodology talks on pleiotropy, and planning for future projects. Drop-ins for any part of the program are welcome. If you have any questions, kindly contact [mailto:ingrid@dsgmail.wustl.edu Ingrid Borecki] [mailto:ingrid@dsgmail.wustl.edu ingrid@dsgmail.wustl.edu] directly for details<u></u><u><br></u> | The Adiposity WG will hold a one-day meeting on Wednesday Oct 26 from 9:00 – 5:00 pm PT in conjunction with the CHARGE LA| Redondo Beach Investigator meeting. The Adiposity meeting is opened to all CHARGE investigators and meeting participants, and will be held at the same venue as the main meeting, the Crowne Plaza Redondo Beach and Marina Hotel. Please note registration is requested as lunch and refreshments will be served (register via the main CHARGE meeting registration web page– currently under construction). An agenda will be available prior to the meeting and will include project updates, methodology talks on pleiotropy, and planning for future projects. Drop-ins for any part of the program are welcome. If you have any questions, kindly contact [mailto:ingrid@dsgmail.wustl.edu Ingrid Borecki] [mailto:ingrid@dsgmail.wustl.edu ingrid@dsgmail.wustl.edu] directly for details<u></u><u><br></u> | ||
<u><br></u> | <u><br></u> | ||
Please contact Ann Walsh if you have any questions or suggestions. | Please contact Ann Walsh if you have any questions or suggestions. | ||
Thank you, [mailto:walshac@nhlbi.nih.gov Ann Walsh] ([mailto:walshac@nhlbi.nih.gov walshac@nhlbi.nih.gov]) on behalf of the CHARGE Steering Committee <br>508-663-4046<br> | Thank you, [mailto:walshac@nhlbi.nih.gov Ann Walsh] ([mailto:walshac@nhlbi.nih.gov walshac@nhlbi.nih.gov]) on behalf of the CHARGE Steering Committee <br>508-663-4046<br> | ||
<br> | <br> | ||
---- | ---- | ||
<br><br>Iceland Meeting: Date to be determined (May 2012) | <br><br>Iceland Meeting: Date to be determined (May 2012) | ||
===== | ===== | ||
| Line 70: | Line 70: | ||
=== Past meetings (includes links to agendas and slides) === | === Past meetings (includes links to agendas and slides) === | ||
*[[Boston Meeting 2011|'''Boston Meeting''']]''':''' February 9-11, 2011 hosted by Framingham | *[[Boston Meeting 2011|'''Boston Meeting''']]''':''' February 9-11, 2011 hosted by Framingham | ||
*[[Houston Meeting|Houston Meeting]]: April 28-30, 2010, hosted by ARIC | *[[Houston Meeting|Houston Meeting]]: April 28-30, 2010, hosted by ARIC | ||
*[[DC Meeting|Washington DC Meeting]] Oct 29-30, 2009 | *[[DC Meeting|Washington DC Meeting]] Oct 29-30, 2009 | ||
*[[RotterdamMeeting|Rotterdam Meeting]]: held 16-17 April 2009 | *[[RotterdamMeeting|Rotterdam Meeting]]: held 16-17 April 2009 | ||
*[[SeattleMeeting|Seattle Meeting]]: held 9-11 July 2008 | *[[SeattleMeeting|Seattle Meeting]]: held 9-11 July 2008 | ||
*[[FraminghamMeeting|Framingham Meeting]]: held 22-24 January 2008 | *[[FraminghamMeeting|Framingham Meeting]]: held 22-24 January 2008 | ||
== Founding Cohorts == | == Founding Cohorts == | ||
*Age, Gene, Environment Susceptibility ([http://www.hjarta.is/english/ages AGES]) | *Age, Gene, Environment Susceptibility ([http://www.hjarta.is/english/ages AGES]) | ||
*Atherosclerosis Risk in Communities Study ([http://www.cscc.unc.edu/aric/ ARIC]) | *Atherosclerosis Risk in Communities Study ([http://www.cscc.unc.edu/aric/ ARIC]) | ||
*Cardiovascular Health Study ([http://www.chs-nhlbi.org/default.htm CHS]) | *Cardiovascular Health Study ([http://www.chs-nhlbi.org/default.htm CHS]) | ||
*Framingham Heart Study ([http://www.framinghamheartstudy.org/ FHS]) | *Framingham Heart Study ([http://www.framinghamheartstudy.org/ FHS]) | ||
*Rotterdam Study (ERGO or [http://www.erasmus-epidemiology.nl/research/ergo.htm RS]) | *Rotterdam Study (ERGO or [http://www.erasmus-epidemiology.nl/research/ergo.htm RS]) | ||
== Other Resources == | == Other Resources == | ||
*Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] or [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ] for information on using the wiki software. | *Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] or [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ] for information on using the wiki software. | ||
*Please try to use text or online-viewable formats such as plain text or PDF whenever feasible. Ways of doing this include saving your document as HTML and then running it through [http://diberri.dyndns.org/wikipedia/html2wiki/index.html html2wiki] to get pasteable "wikitext" or using [http://www.openoffice.org/ OpenOffice] to export files into as MediaWiki format. | *Please try to use text or online-viewable formats such as plain text or PDF whenever feasible. Ways of doing this include saving your document as HTML and then running it through [http://diberri.dyndns.org/wikipedia/html2wiki/index.html html2wiki] to get pasteable "wikitext" or using [http://www.openoffice.org/ OpenOffice] to export files into as MediaWiki format. | ||
*[[Calendar]]: Editable calendar of ongoing calls (not currently updated) | *[[Calendar]]: Editable calendar of ongoing calls (not currently updated) | ||
*[[TimeZones|Time Zones]]: Useful information for setting up conference calls | *[[TimeZones|Time Zones]]: Useful information for setting up conference calls | ||
Revision as of 01:29, 26 October 2011
CHARGE Consortium Wiki (Cohorts for Heart and Aging Research in Genomic Epidemiology)
Getting started
Unlike the CHARGE Consortium Public Website, this wiki requires a username and password to view most pages. To gain access, please fill-out the Request Account form; new user requests are reviewed by the Research Steering Committee approximately twice per month.
Once logged in, you can edit existing pages or Create a new page. Wikipedia has a nice tutorial on how to edit pages.
Consortium Documents (public, no login required)
- CHARGE Principles (pdf) : Principles for collaboration in the consortium, approved Jan 2008 by founding cohorts.
- CHARGE Working Group Principles (pdf) : Principles for collaboration in CHARGE working groups, new participants in working groups or CHARGE projects are asked to review and agree to these principles before joining.
- Aggregate Results-Sharing Principles : Guidelines for sharing results of GWAS, for participation in working groups and collaborative meta-analyses.
- Results Sharing Format : file format guidelines for sharing of aggregate results for meta-analysis.
Committees & Working Groups
- Research Steering Committee: Membership and minutes
- Analysis Subcommittee: Resources and references for doing analyses, and minutes of analysis calls
- CHARGE-S PAGE : The CHARGE Sequencing GWAS follow-up project
- Working Groups: Directory of phenotype working groups
- Results Sharing: Listing of file-sharing sites for each Working Group and contributing study, and details about CHARGE results sharing protocols
Consortium Information
- CHARGE Consortium : Public consortium website
- Logos : versions of the CHARGE Tiger, with some explanations of its origins.
- Consortium Overview: Overview for each cohort's genotyping, imputation, and funding acknowledgements.
- CHARGE Newsletters: Archive of the newsletters sent to everyone with a wiki account
- Grant information: Updates on CHARGE grant submissions
- CHARGE Publications: Last updated November 2010 (spreadsheet; PDF PubMed format)
Methods paper: Psaty BM, O'Donnell CJ, Gudnason V, Lunetta KL, Folsom AR, Rotter J.L., Uitterlinden AG, Harris TB, Witteman JCM, Boerwinkle E, on behalf of the CHARGE Consortium. Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium: Design of prospective meta-analyses of genome-wide association studies from five cohorts. Circ Cardiovasc Genet. 2009;2:73-80.
Investigator Meetings
Los Angeles/Redondo Beach, CA meeting: October 26-28 2011
The 2011 Fall CHARGE Investigator Meeting, hosted by the University of Washington and Cedars-Sinai Medical Center will be held at the Crowne Plaza Redondo Beach and Marina Hotel 300 N. Harbor Drive | Redondo Beach, CA 90277 on October 26-28, 2011.
Hotel reservations at1-888-233-9527 or online at the CHARGE Registration page . A block of rooms has been reserved for the 2011 Fall CHARGE Investigator Meeting at the rate of $149.00 (+tax) per night.
Abstract/Poster Guidelines Deadline extended to October 14
Draft CHARGE LA Investigator meeting Agenda as of 10/7/11
File:Abstract Submission guidelines LA f .pdf
Wednesday October 26, 2011
The Adiposity WG will hold a one-day meeting on Wednesday Oct 26 from 9:00 – 5:00 pm PT in conjunction with the CHARGE LA| Redondo Beach Investigator meeting. The Adiposity meeting is opened to all CHARGE investigators and meeting participants, and will be held at the same venue as the main meeting, the Crowne Plaza Redondo Beach and Marina Hotel. Please note registration is requested as lunch and refreshments will be served (register via the main CHARGE meeting registration web page– currently under construction). An agenda will be available prior to the meeting and will include project updates, methodology talks on pleiotropy, and planning for future projects. Drop-ins for any part of the program are welcome. If you have any questions, kindly contact Ingrid Borecki ingrid@dsgmail.wustl.edu directly for details
Please contact Ann Walsh if you have any questions or suggestions.
Thank you, Ann Walsh (walshac@nhlbi.nih.gov) on behalf of the CHARGE Steering Committee
508-663-4046
Iceland Meeting: Date to be determined (May 2012)
=====
Past meetings (includes links to agendas and slides)
- Boston Meeting: February 9-11, 2011 hosted by Framingham
- Houston Meeting: April 28-30, 2010, hosted by ARIC
- Washington DC Meeting Oct 29-30, 2009
- Rotterdam Meeting: held 16-17 April 2009
- Seattle Meeting: held 9-11 July 2008
- Framingham Meeting: held 22-24 January 2008
Founding Cohorts
- Age, Gene, Environment Susceptibility (AGES)
- Atherosclerosis Risk in Communities Study (ARIC)
- Cardiovascular Health Study (CHS)
- Framingham Heart Study (FHS)
- Rotterdam Study (ERGO or RS)
Other Resources
- Consult the User's Guide or MediaWiki FAQ for information on using the wiki software.
- Please try to use text or online-viewable formats such as plain text or PDF whenever feasible. Ways of doing this include saving your document as HTML and then running it through html2wiki to get pasteable "wikitext" or using OpenOffice to export files into as MediaWiki format.
- Calendar: Editable calendar of ongoing calls (not currently updated)
- Time Zones: Useful information for setting up conference calls