Bioinformatics
In 1997, our lab embarked on a new program area, now referred to as bioinformatics. The main
components of this program have been the ONRC
Clearinghouse for the Olympic Peninsula, several metadata projects for the National Park Service,
and the development of the Pacific Northwest
Information Node of the National Biological Information Infrastructure (NBII).
The Fire and Mountain Ecology Lab has been very competitive in this area and has received eleven grants or contracts
from six different funding sources for this program, ranging from $4,500 to $200,000.
The FME Lab supplies metadata to four different nodes of the NBII and National Spatial Data Infrastructure
(NSDI) Clearinghouse. The following is a list of our clearinghouse and metadata projects to date.
- Olympic Natural Resources Center (ONRC) Clearinghouse
From 1997 to 2001, the Fire and Mountain Ecology Lab created the
ONRC Clearinghouse, a
comprehensive Clearinghouse for geospatial and biological metadata and data,
for the Olympic Peninsula and Willapa Bay regions of Washington state.
We developed over 650 metadata records for the project, representing data from federal, state, county and
tribal agencies, University researchers, and non-profit agencies.
Funded by the Olympic Natural Resources Center, the National Biological Information Infrastructure (NBII),
and FGDC Cooperative Agreements Program, the ONRC records are also available through the
Washington State Geospatial Clearinghouse.
- North Cascades National Park
FAME Lab technicians developed metadata for 49 legacy geospatial and biological datasets
for the North Cascades National Park Complex. A local index of these metadata is available
These metatdata are indexed locally, and are searchable through the FARWest, Washington state and
National Park Service Clearinghouse Nodes.
This project was funded by the National Park Service and FGDC Cooperative Agreements Program.
- National Park Service Pacific West Region
The FAME Lab developed geospatial metadata for a number of
park units in the NPS's Pacific West Region, including Cabrillo National
Monument, Crater Lake National Park, Craters of the
Moon National Monument, Ebey's Landing National Historical Reserve, Fort
Clatsop National Memorial, Hagerman Fossil Beds National Monument, Lava
Beds National Monument, Mojave National Preserve, Nez Perce National
Historic Park, Oregon Caves National Monument, Point Reyes National
Seashore, San Juan Island National Historic Park, Whitman Mission
National Historic Site, and Yosemite National Park. In most cases,
'base' geospatial data layers such as park boundaries, roads, trails, and
hydrographic features were developed to give each of these parks a
basic representation. These data are indexed on the
NPS GIS site, and are available on the FARWest,
Washington state and National Park Service FGDC Clearinghouse Nodes.
This project was funded by a grant from the FGDC Cooperative Agreements Program to the NPS.
- Cabrillo National Monument
The NPS Pacific West Region also asked the Fire and Mountain Ecology Lab to develop
metadata for geospatial and biological data layers for Cabrillo National Monument and
the surrounding Point Loma Ecological Reserve, which is jointly managed by the NPS,
the U.S. Navy, the U.S. Coast Guard, and other Federal agencies. This reserve contains
a remnant of California's coastal sage scrub habitat, now largely lost to development.
We developed metadata for the many data layers used as inputs for the model used to design the reserve.
Metadata developed under this project are indexed on the NPS GIS site,
and are hosted on and searchable through the FARWest, Washington state, and National Park Service FGDC Clearinghouse Nodes.
This project was funded by the National Park Service.
- Fire and Mountain Ecology Lab Metadata
Our metadata technicians have developed metadata for most of the Lab's
research and technical assistance projects and graduate student
research. Indexed locally, these records are also
hosted on and searchable through the FARWest NBII node and Washington state node.
Many records for our research on the Olympic Peninsula are also on the ONRC node.
- Fire and Environmental Research Applications Team
Our metadata technicians are also developing metadata for several projects at the USDA Forest
Service Pacific Wildland Fire Sciences Lab, including the
Northwest
Fire Research Clearinghouse (FIREHouse), which is supported by the
Joint Fire Science Program and the NBII.
- NBII Pacific Northwest Information Node (PNWIN)
In 2000, Congress appropriated four million dollars to the NBII program
to develop the beginnings of the Next-Generation NBII. One component of
this "NBII-2", as envisioned in Teaming with Life: Investing
in Science to Understand and Use America's Living Capital (President's
Committee of Advisors on Science and Technology, June 1998) is a series
of regional
information nodes. Because of our reputation in NBII clearinghouse
and metadata work, the Fire and Mountain Ecology Lab was asked to
develop the NBII's Pacific Northwest Information Node.
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