Genome 562

Population Genetics

Spring, 2003


News about the course

The grades have been determined. A grade distribution histogram can be seen as a PDF here. Remaining graded homework papers are available from Brian Giebel in K336 (not K335 as I announced!) Health Sciences. Your point totals and grades are returned to you with them.

(old) We're a bit late in getting organized owing to other pressures on me. If you need text material for the first few lectures, but intend to buy the course text, you could print out the first chapter of the PDF that we have posted (see link above).


Description from the UW Course Catalog

GENOME 562 Population Genetics
Credits: 4
Quarters: Sp
Instructor: Felsenstein
Course Desc.: Mathematical and experimental approaches to the genetics of natural populations, especially as they relate to evolution. Emphasis on theoretical population genetics. Prerequisite: permission of instructor. Offered: Sp.


What are some other related courses?

Biology 454
The main evolution course at the University, taught yearly by Toby Bradshaw and Jon Herron Both are fine researchers in evolutionary biology. Text in past has been Futuyma's "Evolutionary Biology" or Ridley's "Evolution". This year it was Freeman and Herron's "Evolutionary Analysis". Winter quarter.
Zoology 414
Molecular evolution course by Scott Edwards, who is a very active researcher in that area. Texts have been Li and Graur "Fundamentals of Molecular Evolution" and Avise "Molecular Markers". Winter quarter.
Genome 570
This is my graduate-level course on Phylogenetic Inference. Methods for inferring phylogenies, and methods for doing things with them. Some background in statistics necessary. It will be given every other Spring (even numbered years).
Statistics/Biostatistics 550-551-552
The core course series for the UW's outstanding Statistical Genetics program. The three courses are:
550
Statistical Genetics I: Mendelian traits. Offered each Autumn by Elizabeth Thompson, who is a major figure (one can say a major force) in development of statistical genetics methodology.
551
Statistical Genetics II: Quantitative Traits. Offered each Winter by Stephanie Monks (Biostatistics), a new faculty member.
552
Statistical Genetics III: Medical Genetics Studies. Offered each Spring by Ellen Wijsman (Medical Genetics and Biostatistics) who is a iwell-known statistical geneticist.
Others
There are more courses and I'll gradually try to put descriptions of them here. Some other faculty members in this area (evolutionary genetics) are Leonid Kruglyak (Fred Hutchinson Cancer Research Center), Matthew Stephens (Statistics), Carl Bergstrom (Biology) and Phil Green (Molecular Biotechnology).

What are some Internet resources on evolutionary biology?

There are many:

Newsgroups

Some brief descriptions of some of the major ones covering evolution:

sci.bio.systematics
Discussion of systematics, including phylogeny and classification. Very little traffic. Most postings are serious discussions by researchers. Some percentage of them are semantic issues or legalistic discussions of taxon names.
bionet.molbio.evolution
Discussion among researchers about molecular evolution. Low volume, high quality.
sci.bio.paleontology
Tends to be filled with postings by fossil enthusiasts and tends to be dinosaur-centered. Some creation/evolution debating too.
bionet.population-biology
This one exists but is basically defunct.
sci.bio.evolution
Moderated by Josh Hayes, formerly of our own Center for Quantitative Sciences, who should get some sort of award for putting up with a lot of nonsense. I think it was intended as a forum for discussion among researchers, but has tended to be filled with postings by others about whether humans are still evolving (answer: yes, but it's extremely slow compared to cultural change) and whether laughter is selectively advantageous. Not intended for evolution/creation debates: Josh screens these out.
talk.origins
The arena for endless debate between creationists and others, with frequent digressions into theology. Extremely high noise to signal ratio. When a decisive point is made, the opponent changes the subject or just refuses to respond.

Web Pages


Where can I get a copy of the genetic simulation program?

The program is freely distributable. It is available from my workstation by anonymous ftp. There you will find source code, documentation and executables for Windows, Macs, and some Unix workstations: To fetch any of these by ftp Click here It will show a page which then allows you to download the program.


this page maintained fitfully by Joe Felsenstein