Fishman, L, Aagaard, J., and Tuthill, J. 2008. Towards the evolutionary genomics of gametophytic divergence: Patterns of transmission ratio distortion in monkeyflower (Mimulus) hybrids reveal a complex genetic basis for conspecific pollen precedence. Evolution, in press.
Aagaard, J., Xianhua, Y., MacCoss, M., and Swanson, W. 2006. Rapidly evolving zona pellucida domain proteins are a major component of the vitelline envelope of abalone eggs. Proceedings of the National Academy of Sciences, U.S.A., 46: 17302-17307.
Sorensen, F., Mandel, N., Aagaard, J. 2001. Role of selection vs. historical isolation in racial differentiation of ponderosa pine in southern Oregon--an investigation of alternative hypotheses. Canadian Journal of Forest Research 31:1127-1139.
Aagaard, J., Harrod, R., and Shea, K. 1999. Genetic variation among populations of the rare lady-slipper orchid (Cypripedium fasciculatum) from Washington state. Natural Areas Journal 19:234-238.
Krutovskii, K., Erofeeva, S., Aagaard, J., and Strauss, S. 1999. Simulation of effects of dominance on estimates of population genetic diversity and differentiation. Journal of Heredity 90: 499-502.
Aagaard, J., Krutovskii, K., and Strauss, S. 1998. RAPD markers of mitochondrial origin exhibit lower population diversity and higher differentiation than RAPDs of nuclear origin in Douglas-fir. Molecular Ecology 7: 801-812.
Aagaard, J., Krutovskii, K., and Strauss, S. 1998. RAPDs and allozymes exhibit similar levels of differentiation and diversity in Douglas-fir. Heredity 81: 69-78.
Aagaard, J., Vollmer, S., Sorensen, F., and Strauss, S. 1995. Mitochondrial DNA products among RAPD profiles are frequent and strongly differentiated between races of Douglas-fir. Molecular Ecology 4: 441-447.