Calendar
Classes meet Thursdays and Fridays 10:00 - 11:20 am
Q/A and Office Hour with Prof on Thursdays 11:20 - 12:00 pm
Labs meet Fridays 11:30-2:20 pm and lab assignments are due at the beginning of lab
All classes and labs are in person
| Week | Date | Lecture | Lab |
|---|---|---|---|
| 1 | 1/4 | L1: Introduction, Housekeeping, and Protein Structure | Lab 1:Intro and Homology Modeling with MODELLER (due 1/12 at beginning of lab) |
| 1/5 | L2: Homology Modeling and Intro to First Lab | ||
| 2 | 1/11 | L3: Protein Structure and Rosetta | Lab 2: Intuitive Design, Rosetta Design (due 1/19, beginning of lab) |
| 1/12 | L4: Structure, Forces and Molecular Mechanics | ||
| 3 | 1/18 | L5: Molecular Dynamics | Lab 3: MD: WT full, RD full, WT fragment, designed fragment (due 1/26, beginning of lab) |
| 1/19 | L6: MD and MD Analysis | ||
| 4 | 1/25 | L7: Rules for Design 1 | Lab 4: MD Analysis, Generation II Design and Simulation (due 2/2, beginning of lab) |
| 1/26 | L8: Rules for Design 2 | ||
| 5 | 2/1 | L9: Rules for Design 3 | Lab 5: Generation II Analysis, Final Writeup (due 2/9, beginning of lab) |
| 2/2 | Rosetta, MD and Design | ||
| 6 | 2/8 | L10: Design Examples 1 | Final Lab Writeups Due 2/9 by 11:59 PM Start Project |
| 2/9 | L11: Design Examples 2 | >||
| 7 | 2/15 | Literature Review | Work on Project |
| 2/16 | Literature Review | >||
| 8 | 2/22 | Rosetta Design Examples: David Baker | >Work on Your Project |
| 2/23 | L12: Design Examples 3 | >||
| 9 | 2/29 | L13: Design Examples 4 | >Work really hard on your project |
| 3/1 | Sarah Nick : Biosensors | ||
| 10 | 3/7 | 588 Presentations | Keep Working Really Hard on Your Project |
| 3/8 | 588 Presentations | ||
| 3/14/24 | Project Writeups: Writeups due on or before Friday 3/15/24 at 5 pm. Email PDF of your writeup to DAGGETT at uw AND to SNICK36 at uw |
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