Labs
All labs are due BEFORE the beginning of the next lab period. Please email them AS A PDF to Sarah Nick and include your last name and the lab number in the filename (e.g. Smith_Lab1.pdf). Free pdf conversion software is available at www.dopdf.com.
- Lab 1: Intro to Sequence, Structure, and Homology Modeling with MODELLER
- Lab 0
- Lab 1
- Due: 1/12
- UCSF Chimera
- MODELLER
- Lab 2: Intuitive Design, Rosetta Design
- Lab 2
- Due: 1/19
- WT MD Movie
- Lab 3: MD Simulations: WT full, RD full, WT fragment, designed fragment
- Lab 3
- Due: 1/26
- Lab 4: MD Analysis, Generation II Design and Simulation
- Lab 4
- Due: 2/2
- Lab 5: Generation II Analysis, Final Writeup
- Lab 5
- Due: 2/9
- Formal writeup in standard journal format covering the first 5 weeks of labwork
- Reading: Instructions for writing a scientific paper
- Distilled instructions for writing a scientific paper