| |
Marina Kalyuzhnaya Marina Kalyuzhnaya Department of Microbiology University of Washington
|
Education
Ph.D. 2000, Skryabin Institute for Biochemistry and Physiology of Microorganisms, Russian Academy of Science,
Puschino, Russia
M.S. 1994, Dnepropetrovsk State University, Dnepropetrovsk, Ukraine
Research interests
Microbial ecology and environmental metagenomics
Microbial evolution and Systematics Structure and Function of methylotrophic
communities
Detection of methylotrophic function and methylotrophic subgroups in natural
environments FISH-Flow Cytometry based Cells Sorting of methylotrophic bacteria
from natural samples
Selected Publications
Kalyuzhnaya M.G., Lapidus A, Ivanova N, Copeland AC, McHardy AC, Szeto E, Salamov A., Grigoriev IV, Suciu D, Levine SR, Markowitz VM, Rigoutsos I, Tringe SG, Bruce D.C., Richardson M, Lidstrom ME, Chistoserdova L. 2008. High-resolution metagenomics targets specific functional types in complex microbial communities. Nature Biotechnology 26: 1029 - 1034
Kalyuzhnaya M.G., Lidstrom M.E. and Chistoserdova L. 2008. Real-time detection of actively metabolizing microbes via redox sensing as applied to methylotroph populations in Lake Washington. The SME Journal. ISME J. 2(7):696-706
Kalyuzhnaya M.G., Hristova K., Lidstrom M. E., and Chistoserdova L. 2008. Characterization of a novel methanol dehydrogenase in representatives of Burkholderiales: implications for environmental detection of methylotrophy and evidence for convergent evolution. J. Bacteriol. 190(11):3817-23
Kalyuzhnaya M.G., Bowerman S., Nercessian O., Lidstrom M.E., Chistoserdova L. Highly divergent genes for methanopterin-linked C1 transfer reactions in Lake Washington, assessed via metagenomic analysis and mRNA detection. Appl.Envir.Microbiol. (in press)
Kalyuzhnaya M.G., S. M. Stolyar, A. J. Auman, J. C. Lara, M.E. Lidstrom and L. Chistoserdova. Taxonomic characterization of a methanotrophic isolate from Lake Washington, Seattle, USA, and description of Methylosarcina lacustra sp. IJSEM. 2005. 55
Vorholt J.A., M.G. Kalyuzhnaya, C.H. Hagemeier, M.E. Lidstrom and L. Chistoserdova. MtdC, a novel class of methylene tetrahydromethanopterin dehydrogenases. 2005 J.Bacteriol. 187:6069–6074
Kalyuzhnaya M.G., M.E. Lidstrom, and L. Chistoserdova. Analysis of gene islands involved in methanopterin-linked C1 transfer reveals new functions and provides evolutionary insights. J. Bacteriol. 2005. 187: 4607-4614
Kalyuzhnaya M.G., O. Nercessian, M.E. Lidstrom, and L. Chistoserdova Development and application of new molecular tools based on fhcD for environmental detection of H4MPT-linked C1-metabolism in bacteria. Environ.Microbiol. 2005 7(8): 1269-1274
Kalyuzhnaya M.G., O.Narcessian, M.E.Lidstrom and L.Chistoserdova. Community-level analysis: genes encoding methanopterin-dependent enzymes. Meth. Enzym. 2005, 397
Kalyuzhnaya M.G., Lidstrom M. E., and Chistoserdova L. Utility of Environmental Primers Targeting Ancient Enzymes: Methylotroph Detection in Lake Washington. Microbial.Ecol. Microbiol.Ecol. 2004, 48:463-472
Kaluzhnaya M.G., Khmelenina V, Eshinimaev B, Suzina N, Nikitin D, Solonin A, Lin JL, McDonald I, Murrell C, Trotsenko Y. Taxonomic characterization of new alkaliphilic and alkalitolerant methanotrophs from soda lakes of the Southeastern Transbaikal region and description of Methylomicrobium buryatense sp.nov. Syst Appl Microbiol. 2001. 24(2):166-176
Kaliuzhnaia M.G., Makutina V.A., Rusakova T.G., Nikitin D.V., Khmelenina V.N., Dmitriev V.V., Trotsenko Y.A. Methanotrophic communities in the soils of Russian northern taiga and subarctic tundra. Mikrobiologiia. 2002. 71(2):264-271
Kalyuzhnaya M.G., Khmelenina V.N., Kotelnikova S., Holmquist l., Pedersen K., Trotsenko Y.A. - Methylomonas scandinavica sp.nov. a new methanotrophic psychrotrophic bacterium isolated from deep igneous rock ground water of Sweden - Syst. Appl. Microbiol. 1999, V.22 p.565-572
Kalyuzhnaya M.G., Khmelenina V.N., Lysenko A.M., Suzina N.E.,Trotsenko Y.A
- New methanotrophic isolates from soda lakes of the southern Transbaikal
region. Mikrobiologiia: 1999, v.68, N 5, p.689-697