1. Chistoserdova, L., and M.E. Lidstrom. 2003. The role of genomics in methylotrophic bacteria for understanding biogeochemical cycling. In: Genes in the Environment, Blackwell Science Ltd., UK, pp.133-149.

  2. Marx, C.J., J.A. Miller, L. Chistoserdova, and M.E. Lidstrom. 2004. Multiple formaldehyde oxidation/detoxification pathways in Burkholderia fungorum LB400. J. Bacteriol. 186:2173-2178.

  3. Chistoserdova, L., C. Jenkins, M. Kalyuzhnaya, C.J. Marx, A. Lapidus et al. 2004. The enigmatic planctomycetes may hold a key to the origins of methanogenesis and methylotrophy. Mol. Biol. Evol. 21:1234-1241.

  4. Kalyuzhnaya, M.G., M.E. Lidstrom, and L. Chistoserdova. 2004. Utility of environmental probes targeting ancient enzymes: methylotroph detection in Lake Washington. Microb. Ecol. 48:436-472.

  5. Chistoserdova, L., J.A. Vorholt, and M.E. Lidstrom. 2005. A genomic view of methane oxidation by aerobic bacteria and anaerobic archaea. Genome Biol. 6:208.

  6. Miller J.A., M.G. Kalyuzhnaya, E. Noyes, J.C. Lara, M.E. Lidstrom, and L. Chistoserdova. 2005. Labrys methylaminiphilus sp. nov., a new facultatively methylotrophic bacterium from a freshwater lake sediment. Internat. J. Syst. Evol. Microbiol. 55:1247-1253.

  7. Kalyuzhnaya, M.G., N. Korotkova, G. Crowther, C.J. Marx, M.E. Lidstrom, and L. Chistoserdova. 2005. Analysis of gene islands involved in methanopterin-linked C1 transfer reactions reveals new functions and provides evolutionary insights. J. Bacteriol. 187:4607-4614.

  8. Kalyuzhnaya, M.G., O. Nercessian, M.E. Lidstrom, and L. Chistoserdova. 2005. Development and application of polymerase chain reaction primers based on fhcD for environmental detection of methanopterin-linked C1-metabolism in bacteria. Environ. Microbiol. 7:1269-1274.

  9. Vorholt, J.A., M.G. Kalyuzhnaya, C.H. Hagemeier, M.E. Lidstrom, and L. Chistoserdova. 2005. MtdC, a novel class of methylene tetrahydromethanopterin dehydrogenases. J. Bacteriol. 187:6069-6074.

  10. Kalyuzhnaya, M.G., and L. Chistoserdova. 2005. Community-level analysis: genes encoding methanopterin-dependent enzymes. Meth. Enzymol. 397:443-454.

  11. Kalyuzhnaya M.G., S.M. Stolyar, A.J. Auman, J.C. Lara, M.E. Lidstrom, and L. Chistoserdova. 2005. Methylosarcina lacus sp. nov., a methanotroph from Lake Washington, Seattle, USA. Internat. J. Syst. Evol. Microbiol. 55:2345-2350.

  12. Kalyuzhnaya, M.G., O. Nercessian, A. Lapidus, and L. Chistoserdova. 2005. Fishing for biodiversity: novel methanopterin-linked C1 genes deduced from the Sargasso Sea metagenome. Environ. Microbiol. 7:1909-1916.

  13. Chistoserdova, L., M.G. Kalyuzhnaya, and M.E. Lidstrom. 2005. C1 transfer modules: from genomics to ecology. ASM News 71:521-528.

  14. Nercessian, O., E. Noyes, M.G. Kalyuzhnaya, M.E. Lidstrom, and L. Chistoserdova. 2005. Structure of active methylotroph community in a freshwater lake sediment, assessed via RT-PCR and stable isotope probing. Appl. Environ. Microbiol. 71:6885-6899.

  15. Nercessian, O., M.G. Kalyuzhnaya, S.B. Joye, M.E. Lidstrom, and L. Chistoserdova. 2005. Analysis of fae and fhcD genes in a soda lake, Mono Lake (CA). Appl. Environ. Microbiol. 71:8949-8953.

  16. Kalyuzhnaya, M.G., S. Bowerman, O. Nercessian, M.E. Lidstrom, and L. Chistoserdova. 2005. Highly divergent genes for methanopterin-linked C1 transfer reactions in Lake Washington, assessed via metagenomic analysis and mRNA detection. Appl. Environ. Microbiol. 71:8846-8854.

  17. Kalyuzhnaya, M.G., O. Nercessian, M.E. Lidstrom, and L. Chistoserdova. 2006. Environmental genomics of C1 metabolism. Manual of Environmental Microbiology. C.J. Hurst, R.L. Crawford, J.L. Garland, D.A. Lipson, A.L. Mills, L.D. Stetzenbach Eds. ASM Press, pp. 488-496.

  18. Kalyuzhnaya, M.G., S. Bowerman, M.E. Lidstrom, and L. Chistoserdova. 2006. Methylotenera mobilis, gen. nov. sp. nov., an obligately methylamine-utilizing bacterium within the family Methylophilaceae. Internat. J. Syst. Evol. Microbiol. 56:2819-2823.

  19. Kalyuzhnaya, M.G., R. Zabinski, S. Bowerman, D.R. Baker, M.E. Lidstrom, and L. Chistoserdova. 2006. Fluorescence in situ hybridization-flow cytometry-cell sorting-based method for separation and enrichment of type I and type II methanotroph populations. Appl. Environ. Microbiol. 72:4293-4301.

  20. Kalyuzhnaya, M.G., S. Bowerman, C.C. Pacheco, P. De Marco, M.E. Lidstrom, and L. Chistoserdova. 2006. Methyloversatilis universalis gen. nov., sp. nov., a novel taxon within the Betaproteobacteria represented by three methylotrophic isolates. Internat. J. Syst. Evol. Microbiol. 56:2517-2522.

  21. Chistoserdova, L., A. Lapidus, C. Han, L. Goodwin, L. Saunders et al. 2007. The genome of Methylobacillus flagellatus, the molecular basis for obligate methylotrophy, and the polyphyletic origin of methylotrophy. J. Bacteriol. 189:4020-4027.

  22. Kalyuzhnaya M. G., V. Khmelenina, B.T. Eshinimaev, D. Sorokin D., H. Fuse et al. 2008. Reclassification and emended description of halo(alkali)philic and halo(alkali)tolerant methanotrophs of the genera Methylomicrobium and Methylobacter. J. Syst. Evol. Microbiol. 58:591-596.

  23. Kalyuzhnaya, M.G., K.R. Hristova, M.E. Lidstrom, and L. Chistoserdova. 2008. Characterization of a novel methanol dehydrogenase in representatives of Burkholderiales: implications for environmental detection of methylotrophy and evidence for convergent evolution. J. Bacteriol. 190:3817-3823.

  24. Kalyuzhnaya, M.G., M.E. Lidstrom, and L. Chistoserdova. 2008. Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington. ISME J. 2:696-706.

  25. Kalyuzhnaya, M.G., A. Lapidus, N. Ivanova, A.C. Copeland, A.C. McHardy et al. 2008. High resolution metagenomics targets major functional types in complex microbial communities. Nat. Biotechnol. 26:1029-1034.

  26. Bosch, G., T. Wang, E. Latypova, M.G. Kalyuzhnaya, M. Hackett, and L. Chistoserdova. 2009. Insights into the physiology of Methylotenera mobilis as revealed by metagenome-based shotgun proteomic analysis. Microbiol. 155:1103-1110.

  27. Chistoserdova , L., M.G. Kalyuzhnaya, and M.E. Lidstrom. 2009. The expanding world of methylotrophic metabolism. Ann. Rev. Microbiol. 63:477-499.

  28. Kalyuhznaya, M.G., W. Martens-Habbena, T. Wang, M. Hackett, S.M. Stolyar et al. 2009. Methylophilaceae link methanol oxidation to denitrification in freshwater lake sediment as suggested by stable isotope probing and pure culture analysis. Environ. Microbiol. Reports, 1:385-392.

  29. Chistoserdova, L. 2009. Functional metagenomics: recent advances and future challenges. Biotechnol. Genet. Eng. Rev. 26:335-351.

  30. Latypova, E., S. Yang, Y.S. Wang, T. Wang, T.A. Chavkin et al. 2010. Genetics of the glutamate-mediated methylamine utilization pathway in the facultative methylotrophic beta-proteobacterium Methyloversatilis universalis FAM5. Mol. Microbiol. 75:426-439.

  31. Kalyuzhnaya MG, D.A. Beck, D. Suciu, A. Pozhitkov, M.E. Lidstrom, and L. Chistoserdova. 2010. Functioning in situ: gene expression in Methylotenera mobilis in its native environment as assessed through transcriptomics. ISME J. 4:388-398.

  32. Chistoserdova, L. 2010. Recent progress and new challenges in metagenomics for biotechnology. Biotechnol. Lett. 32:1351-1359.

  33. Hendrickson, E.L., D.A.C. Beck, T. Wang, M.E. Lidstrom, M. Hackett, and L. Chistoserdova. 2010. The expressed genome of Methylobacillus flagellatus as defined through comprehensive proteomics and new insights into methylotrophy. J. Bacteriol. 192:4859-4867.

  34. Konopka, M.C., T.J. Strovas, D.S. Ojala, L. Chistoserdova, M.E. Lidstrom, and M.G. Kalyuzhnaya. 2011. Respiration response imaging for real-time detection of microbial function at the single-cell level. Appl. Environ. Microbiol. 77:67-72.

  35. Chistoserdova, L. 2011. High-resolution metagenomics: assessing specific functional types in complex microbial communities. In: F.J. de Bruijn, Ed. Handbook of Molecular Microbial Ecology I: Metagenomics and complementary approaches, Wiley, pp. 225-233.

  36. Chistoserdova, L. 2011. Modularity of methylotrophy, revisited. Environ. Microbiol. 13:2603-2622.

  37. Kalyuzhnaya, M.G., D.A.C. Beck, and L. Chistoserdova. 2011. Functional metagenomics of methylotrophs. Meth. Enzymol. 495: 81-98.

  38. Chistoserdova, L. 2011. Methylotrophy in a lake: from metagenomics to single organism physiology. Appl. Environ. Microbiol. 77: 4705-4711.

  39. Lapidus, A., A. Clum, K. LaButti, M.G. Kaluzhnaya, S. Lim, D.A.C. Beck, T. Glavina del Rio, N. Nolan, K. Mavromatis, M. Huntemann, S. Lucas, M.E. Lidstrom, N. Ivanova, and L. Chistoserdova. 2011. Genomes of three methylotrophs from a single niche uncover genetic and metabolic divergence of Methylophilaceae. J. Bacteriol. 193: 3757-3764.

  40. Beck, D.A.C., E.L. Hendrickson, A. Vorobev, T. Wang, S. Lim, M.G. Kalyuzhnaya, M.E. Lidstrom, M. Hackett, and L. Chistoserdova. 2011. An integrated proteomics/ transcriptomics approach points to oxygen as the main electron sink for methanol metabolism in Methylotenera mobilis. J. Bacteriol. 193: 4758-4765.

  41. Kalyuzhnaya, M.G., D.A.C. Beck, A. Vorobev, N. Smalley, D. Kunkel, M.E. Lidstrom, and L. Chistoserdova. 2012. Novel methylotrophic isolates from Lake Washington sediment and description of a new species in the genus Methylotenera, Methylotenera versatilis sp. nov. Internat. J. Syst. Evol. Microbiol. 62:106-111.

  42. Sauter, L.M., E. Latypova, N.E. Smalley, M.E. Lidstrom, S. Hallam, and M.G. Kalyuzhnaya. 2012. Methanotrophic communities of Saanich Inlet: a microcosm perspective. Syst. Appl. Microbiol. 35:198-203.

  43. Chistoserdova, L. The distribution and evolution of C1 transfer enzymes and evolution of the planctomycetes. In: J. Fuerst, Ed. New models for cell structure, origins and biology: planctomycetes. Springer, 2012. In Press.

  44. Chistoserdova, L., and M.E. Lidstrom. Aerobic methylotrophic prokaryotes. The Prokaryotes, Fourth edition. E. Rosenberg, E.F. DeLong, F. Thompson, S. Lory, E. Stackebrandt Eds., Springer, 2012. In Press.