Publications:
- Kalyuzhnaya, M.G., A. Lapidus, N. Ivanova, A. McHardy, A.C. Copeland,
D. Suciu, A. Salamov, A. McHardy, E. Szeto, S.R. Levine, K. Barry,
S. Green-Tringe, I. Grigoriev, V. Markowitz, I. Rigoutsos, P.M. Richardson,
M.E. Lidstrom, and L. Chistoserdova.
High resolution metagenomics targets major functional types in complex
microbial communities. Nat. Biotechnol. 2008, 26:1029-1034.
- Kalyuzhnaya, M.G., K.R. Hristova, M.E. Lidstrom, and L. Chistoserdova.
Characterization
of a novel methanol dehydrogenase in representatives of Burkholderiales:
implications for environmental detection of methylotrophy and evidence
for convergent evolution. J. Bacteriol. 2008, 190:3817-3823.
- Kalyuzhnaya, M.G., M.E. Lidstrom, and L. Chistoserdova. Real-time
detection of actively metabolizing microbes via redox sensing as applied
to methylotroph populations in Lake Washington. ISME J. 2008,
2:696-706.
- Kalyuzhnaya, M.G., V. Khmelenina, B. Eshimaev, D. Sorokin, H. Fuse,
M.E. Lidstrom, and Y. Trotsenko. Reclassification
and emended description of halo(alkali)philic and halo(alkali)tolerant
methanotrophs of genera Methylomicrobium and Methylobacter. Internat.
J. Syst. Evol. Microbiol. 2008, 58:591-596.
- Chistoserdova, L., A. Lapidus, C. Han, L. Goodwin, L. Saunders,
T. Brettin, R. Tapia, P. Gilna, S. Lucas, P.M. Richardson, and M.E.
Lidstrom. The
genome of Methylobacillus flagellatus, the molecular basis for obligate
methylotrophy, and the polyphyletic origin of methylotrophy. J.
Bacteriol. 2007, 189:4020-4027.
- Kalyuzhnaya, M.G., P. De Marco, S. Bowerman, C.C. Pacheco, J.C.
Lara, M.E. Lidstrom, and L. Chistoserdova. Methyloversatilis
universalis gen. nov., sp. nov., a new taxon within the Betaproteobacteria
represented by three methylotrophic isolates. Internat. J. Syst.
Evol. Microbiol. 2006, 56:2517-2522.
- Kalyuzhnaya, S. Bowerman, J.C. Lara, M.E. Lidstrom, and L. Chistoserdova.
Methylotenera
mobilis gen. nov., sp. nov., an obligately methylamine-utilizing bacterium
within the family Methylophilaceae. Internat. J. Syst. Evol. Microbiol.
2006, 56:2819-2823.
- Kalyuzhnaya, M.G., R. Zabinsky, S. Bowerman, D.R. Baker, M.E. Lidstrom,
and L. Chistoserdova.
Fluorescence in situ hybridization-flow cytometry- cell sorting-based
method for separation and enrichment of Type I and Type II methanotroph
populations. Appl. Environ. Microbiol. 2006, 72:4293-4301.
- Kalyuzhnaya, M.G., O. Nercessian, M.E. Lidstrom, and L. Chistoserdova.
Environmental genomics of C1 metabolism. In: Manual of Environmental
Microbiology. C.J. Hurst, R.L. Crawford, J.L. Garland, D.A. Lipson,
A.L. Mills, L.D. Stetzenbach Eds. Pp. 488-496. 2006, ASM Press.
- Kalyuzhnaya, M.G., S. Bowerman, O. Nercessian, M.E. Lidstrom, and
L. Chistoserdova. Highly divergent genes for methanopterin-linked
C1 transfer reactions in Lake Washington, assessed via metagenomic
analysis and mRNA detection. Appl. Environ. Microbiol. 2005, 71:8846-8854.
- Nercessian O., Kalyuzhnaya M.G., Joye S.B., Lidstrom M.E., and L.
Chistoserdova. Analysis of fae and fhcD genes in Mono Lake, California.
Appl. Environ. Microbiol. 2005, 71:8949-8953.
- Kalyuzhnaya M.G., S.M. Stolyar, A.J. Auman, J.C. Lara, M.E. Lidstrom,
and L. Chistoserdova. Methylosarcina lacus sp. nov., a methanotroph
from Lake Washington, Seattle, USA, and emended description of the
genus Methylosarcina. Internat. J. Syst. Evol. Microbiol. 2005, 55:2345-2350.
- Nercessian, O., E. Noyes, M.G. Kalyuzhnaya, M.E. Lidstrom, and L.
Chistoserdova.
Bacterial populations active in metabolism of C1 compounds in the
sediment of Lake Washington, a freshwater lake. Appl. Environ.
Microbiol. 2005, 71:6885-6899.
- Vorholt, J.A., M.G. Kalyuzhnaya, C.H. Hagemeier, M.E. Lidstrom,
and L. Chistoserdova. MtdC, a novel class of methylene tetrahydromethanopterin
dehydrogenases. J. Bacteriol. 2005, 187:6069-6074.
- Kalyuzhnaya, M.G., N. Korotkova, Crowther, C.J. Marx, M.E. Lidstrom,
and L. Chistoserdova. Analysis of gene islands involved in methanopterin-linked
C1 transfer reactions reveals new functions and provides evolutionary
insights. J. Bacteriol. 2005, 187:4607-4614.
- Kalyuzhnaya, M.G., O. Nercessian, M.E. Lidstrom, and L. Chistoserdova.
Development and application of polymerase chain reaction primers based
on fhcD for environmental detection of methanopterin-linked C1 metabolism
in bacteria. Environ. Microbiol. 2005, 7:1269-1274.
- Kalyuzhnaya, M.G., O. Nercessian, A. Lapidus, and L. Chistoserdova.
Fishing for biodibersity: novel methanopterin-linked C1 genes deduced
from the Sargasso Sea metagenome. Environ. Microbiol. 2005. 7:1909-1916.
- Miller J.A., M.G. Kalyuzhnaya, E. Noyes, J.C. Lara, M.E. Lidstrom,
and L. Chistoserdova. Labrys methylaminiphilus Sp. Nov., a new facultatively
methylotrophic bacterium from a freshwater lake sediment. Internat.
J. Syst. Evol. Microbiol. 2005, 55:1247-1253.
- Chistoserdova, L., M.G. Kalyuzhnaya, and M.E. Lidstrom. C1 transfer
modules: from genomics to ecology. ASM News 2005, 71:521-528.
- Kalyuzhnaya, M.G., and L. Chistoserdova. Community-level analysis:
genes encoding methanopterin-dependent enzymes. Meth. Enzymol. 2005,
397:443-454.
- Chistoserdova, L., J.A. Vorholt, and M.E. Lidstrom. A genomic view
of methane oxidation by aerobic bacteria and anaerobic archaea. Genome
Biol. 2005, 6:208.
- Kalyuzhnaya, M.G., M.E. Lidstrom, and L. Chistoserdova. Utility
of environmental probes targeting ancient enzymes: methylotroph detection
in Lake Washington. Microb. Ecol. 2004, 48:436-472.
- Chistoserdova, L., C. Jenkins, M. Kalyuzhnaya, C.J. Marx, A. Lapidus,
J.A. Vorholt, J.T. Staley, and M.E. Lidstrom. The enigmatic planctomycetes
may hold a key to the origins of methanogenesis and methylotrophy.
Mol. Biol. Evol. 2004, 21:1234-1241.
- Marx, C.J., J.A. Miller, L. Chistoserdova, and M.E. Lidstrom. Multiple
formaldehyde oxidation/detoxification pathways in Burkholderia fungorum
LB400. J. Bacteriol. 2004, 186:2173-2178.
- Chistoserdova L., and M.E. Lidstrom. The role of genomics in methylotrophic
bacteria for understanding biogeochemical cycling. In: Genes in the
Environment. 2003. Blackwell Science Ltd., UK. Pp.133-149.
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