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Publications, Patents and Links
Stephen J. Salipante, Dhruba J. SenGupta, Lisa A. Cummings, Tyler A. Land, Daniel R. Hoogestraat, Brad T. Cookson
Application of Whole-Genome Sequencing for Bacterial Strain Typing in Molecular Epidemiology .
Stephen J. Salipante, Toana Kawashima, Christopher Rosenthal, Daniel R. Hoogestraat, Lisa A. Cummings, Dhruba J. Sengupta,
Timothy T. Harkins, Brad T. Cookson, Noah G. HoffmanPerformance Comparison of Illumina and Ion Torrent NextGeneration Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling .
SenGupta DJ, Cummings LA, Hoogestraat DR, Butler-Wu SM, Shendure J, Cookson BT, Salipante SJ. Whole-Genome Sequencing for High-Resolution Investigation of Methicillin-Resistant Staphylococcus aureus Epidemiology and Genome Plasticity .
Stephen J. Salipante, Dhruba J. Sengupta, Lisa A. Cummings, Aaron Robinson, Kyoko Kurosawa, Daniel R. Hoogestraat, Brad T. CooksonWhole genome sequencing indicates Corynebacterium jeikeium comprises 4 separate genomospecies and identifies a dominant genomospecies among clinical isolates .
SenGupta DJ, Cummings LA, Hoogestraat DR, Butler-Wu SM, Shendure J, Cookson BT, Salipante SJ. Whole-Genome Sequencing for High-Resolution Investigation of Methicillin-Resistant Staphylococcus aureus Epidemiology and Genome Plasticity .
Salipante SJ, Hoogestraat DR, Abbott AN, SenGupta DJ, Cummings LA, Butler-Wu SM, Stephens K, Cookson BT, Hoffman NG.Coinfection of Fusobacterium nucleatum and Actinomyces israelii in mastoiditis diagnosed by next-generation DNA sequencing .
Salipante SJ, Sengupta DJ, Hoogestraat DR, Cummings LA, Bryant BH, Natividad C, Thielges S, Monsaas PW, Chau M, Barbee LA, Rosenthal C, Cookson BT, Hoffman NG.Molecular diagnosis of Actinomadura madurae infection by 16S rRNA deep sequencing .
Stephen J. Salipante, Dhruba J. Sengupta, Christopher Rosenthal, Gina Costa, Jessica Spangler, Elizabeth H. Sims, Michael A. Jacobs, Samuel I. Miller, Daniel R. Hoogestraat, Brad T. Cookson, Connor McCoy, Frederick A. Matsen, Jay Shendure, Clarence C. Lee, Timothy T. Harkins, Noah G. HoffmanRapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections
Desiree Marshall, MD; Dhruba J. SenGupta, PhD; Daniel R. Hoogestraat, MB(ASCP); Karen Stephens, PhD; Brad T. Cookson, MD, PhD; Cecilia C.S. Yeung, MD Multilocus Sequencing for Rapid Identification of Molds
Salipante SJ, Hoogestraat DR, Sengupta DJ, Murphey D, Panayides K, Hamilton E, Castaneda-Sanchez I, Kennedy J, Monsaas PW, Mendoza L, Stephens K, Dunn JJ, Cookson BT Molecular Diagnosis of Subcutaneous Pythium insidiosum Infection by Use of PCR Screening and DNA Sequencing
Murphy SC, Hoogestraat DR, Sengupta DJ, Prentice J, Chakrapani A, Cookson BT Molecular diagnosis of cystoisosporiasis using extended-range PCR screening
Stockinger DE, Roellich KM, Vogel KW, Eiffert KL, Torrence AE, Prentice JL, Stephens KG, Wallis CK, Hotchkiss CE, Murnane RD.Primary hepatic Mycobacterium tuberculosis complex infection with terminal dissemination in a pig-tailed macaque (Macaca nemestrina).
Yager JE, Ford ES, Boas ZP, Haseley LA, Cookson BT, Sengupta DJ, Fang FC, Gottlieb GSUreaplasma urealyticum continuous ambulatory peritonealdialysis-associated peritonitis diagnosed by 16S rRNA gene PCR
Dhruba J. SenGupta and Brad T. Cookson SeqSharp | A General Approach for Improving Cycle-Sequencing That Facilitates a Robust One-Step Combined Amplification and Sequencing Method
de Sanctis, Jorgelina T. MD; Carpenter, Christopher F. MD; Sims, Matthew D. MD, PhD; SenGupta, Dhruba J. PhD; Prentice, Jennifer L. MS, MT (ASCP); Cookson, Brad T. MD, PhD; Boyanton, Bobby L. Jr MD, MT (ASCP) Culture-Negative Endocarditis and the Use of Molecular Diagnostics: A Case Report
Woodward JF, Sengupta DJ, Cookson BT, Park JO, Dellinger EP Disseminated Community-Acquired USA300 Methicillin-Resistant Staphylococcus aureus Pyomyositis and Septic Pulmonary Emboli in an Immunocompetent Adult
Harrington AT, Creutzfeldt CJ, Sengupta DJ, Hoogestraat DR, Zunt JR, Cookson BT Diagnosis of Neurocysticercosis by Detection of Taenia solium DNA Using a Global DNA Screening Platform .
Hoffman N. G. and Cookson B. T. Case 8-2007: A Man with Chest Pain Followed by Cardiac Arrest . N. Engl. J. Med. 2007 365(25) 2652
Nichols, W. G., J. Prentice, Y. Houze, L. Carlson, and B. T. CooksonFatal pulmonary infection associated with a novel organism Parastreptomyces abscessus . J. Clin. Microbiol. 2005 43(10): 5376-79.
Rakeman, J. L., U. Bui, K. LaFe, M. B. Coyle, and B. T. CooksonMultilocus DNA sequence comparisons rapidly identify pathogenic molds . J. Clin. Microbiol. 2005 43(7): 3324-3333.
Pottumarthy, S., J. M. Schapiro, J. L. Prentice, Y. B. Houze, S. R. Swanzy, F. C. Fang, and B. T. CooksonClinical isolates of Staphylococcus intermedius masquerading as Methicillin-resistant Staphlococcus aureus . J. Clin. Microbiol. 2004 42(12): 5881-5884.
Panackal, A. A., Y. B. Houze, J. Prentice, S. S. Leopold, B. T. Cookson, W. C. Liles, and A. P. LimayeProsthetic joint infection due to Helcococcus pyogenes . J. Clin. Microbiol. 2004 42(6): 2872-4.
Selvarangan, R., W-K. Wu, T. T. Nguyen, L. C. Carlson, C. K. Wallis, S. K. Stiglich, Y-C. Chen, K. C. Jost, Jr., J. L. Prentice, R. J. Wallace, S. L. Rassoulian Barrett, B. T. Cookson, and M. B. CoyleCharacterization of a novel group of mycobacteria: Proposal of Mycobacterium sherrisii sp. . J. Clin. Microbiol. 2004 42: 90-98.
Selvarangan, R., U. Bui, A. P. Limaye, and B. T. CooksonRapid Identification of Commonly Encountered Candida Species Directly from Blood Culture Bottles . J. Clin. Microbiol. 2003 41: 5660-5664.
Novicki, T. J., K. LaFe, L. Bui, U. Bui, R. Geise, K. Marr, B. T. CooksonGenetic diversity among clinical isolates of Acremonium strictum determined during an investigation of a fatal mycosis. . J. Clin. Microbiiol. 2003 41: 2623-2628.
Pottumarthy, S., A. P. Limaye, J. L. Prentice, Y. B. Houze, S. R. Swanzy, and B. T. CooksonNocardia veterana , a New Emerging Pathogen
Selvarangan, R., A. P. Limaye, and B.T. CooksonRapid identification and differentiation of Candida albicans and C. dubliniensis by capillary-based amplification and fluorescent probe hybridization . J Clin. Microbiol. 2002 40: 4308-4312.
Lingappa, J., W. Lawrence, S. West-Keefe, R. Gautom, and B. T. Cookson Diagnosis of community-acquired Pertussis infection: Comparison of both culture and fluorescent-antibody assays with PCR detection using electrophoresis and dot blot hybridization . J. Clin. Microbiol. 2002 40: 2908-2912.
Chen,Y-C, J. D. Eisner, M. M. Kattar, S. L. Rassoulian-Barrett, K. Lafe, A. P. Limaye, and B. T. CooksonPolymorphic Internal Transcribed Spacer Region 1 DNA Sequences Identify Medically Important Yeasts . J. Clin. Microbiol. 2001 39: 4042-4051.
Kattar, M. M., B. T. Cookson, L. C. Carlson, S. Stiglich, M. Schwartz, T. Nguyen, R. Daza, C. K. Wallis, S. L. Yarfitz, and M. B. CoyleTsukamurella strandjordae sp. nov., a Proposed New Species Causing Sepsis . J. Clin. Microbiol. 2001 39: 1467-1476.
Rassoulian-Barrett, S. L., B. T. Cookson, L. C. Carlson, K.A. Bernard, and M. B. CoyleDiversity within Reference Strains of Corynebacterium matruchotii Includes Corynebacterium durum and a Novel Organism . J. Clin. Microbiol. 2001 39: 943-948.
Limaye A. P., Connolly P. A., Sagar M., Fritsche T. R., Cookson B. T., Wheat L. J., Stamm W. E.Transmission of Histoplasma capsulatum by Organ Transplantation . N Engl J Med. 2000, 343 (16): 1163-1166
Chen, Y-C, J. D. Eisner, M. M. Kattar, S. L. Rassoulian-Barrett, K. LaFe, S. L. Yarfitz, A. P. Limaye, and B. T. CooksonIdentification of Medically Important Yeasts Using PCR-Based Detection of DNA Sequence Polymorphisms in the Internal Transcribed Spacer 2 Region of the rRNA Genes . J. Clin. Microbiol. 2000 38: 2302-2310.
Limaye, A. P., D. K. Turgeon, B. T. Cookson, and T. R. FritschePseudomembranous Colitis Caused by a Toxin A B+ Strain of Clostridium difficile . J. Clin. Microbiol. 2000 38: 1696-1697.
M. M. Kattar, J. F. Chavez, A. P. Limaye, S. L. Rassoulian-Barrett, S. L. Yarfitz, L. C. Carlson, Y. Houze, S. Swanzy, B. L. Wood, and B. T. CooksonApplication of 16S rRNA Gene Sequencing To Identify Bordetella hinzii as the Causative Agent of Fatal Septicemia . J. Clin. Microbiol. 2000 38: 789-794.
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