Temperature-Dependent Photoisomerization Quantum Yields for Azobenzene-Modified DNA

Abstract

We study the photoisomerization quantum yield of azobenzene-modified DNA as a function of temperature for various DNA sequences. We find that even though the photoisomerization quantum yield of free azobenzene is essentially temperature-independent, the trans-to-cis photoisomerization quantum yield depends strongly on temperature when the azobenzene is incorporated into DNA. We show that this temperature dependence is DNA-sequence-dependent and closely linked to the melting temperature of the host DNA. While the trans-to-cis isomerization quantum yield is sequence and temperature-dependent, in contrast, the thermal cis-to-trans isomerization of azobenzene embedded in DNA is sequence-independent and exhibits Arrhenius-like behavior with an activation energy of 88.8 +/- 0.693 kJ/mol and a smaller pre-exponential factor than free azobenzene, yielding first-order cis-to-trans kinetics with a rate constant of (2.08 +/- 0.00952) X 10(-6) s(-1) at 25 degrees C. These results provide an understanding of the azobenzene isomerization mechanisms in DNA sequences to enable more efficient design of optically reprogrammable nanomaterials and biosensors.