The following basic command line tools (part of the SimpleTools Module) are available:
Prints image information from the image file header.
imInfo input.gipl [options]
Options include:
-dtype print type of data in a voxel (char, short, float, etc.)
-nvox print number of voxels in each dimension
-vxdim print voxel dimensions in mm/sec
-fov print field of view in mm
-orient print scan orientation angles with respect to axial data
-date print scan date string (if known)
-time print scan time string (if known)
-name print patient name string (if known)
-pid print patient ID information (if known)
setImHeader input.gipl output.gipl [options]
Options are:
-AcqDate 10/10/2008 set acquisition date
-AcqTime 10:45 set acquisition time
imFlip input.gipl output.gipl [options]
Options are one or more operations applied in sequence:
-reflectX
-reflectY
-reflectZ
-swapXY
-swapXZ
imTrunc input.gipl output.gipl [options]
Options are:
-XStart vox start voxel for extracted region
-XEnd vox end voxel for extracted region
-YStart vox start voxel for extracted region
-YEnd vox end voxel for extracted region
-ZStart vox start voxel for extracted region
-ZEnd vox end voxel for extracted region
-dofout transform.dof transformation to bring truncated volume back to original image
Applies a linear transformation to floatImage.gipl to resample it to the coordinate system of refImage.gipl
mmtrans refImage.gipl floatImage.gipl outputFloat2Ref.gipl transform.dof [options]
Replaces all voxel values in the range minValue to maxValue with newValue
repRange input.gipl output.gipl -NewVal newValue -MinVal minValue -MaxVal maxValue