Software Modules
VAPiD - Viral Annotation Pipeline & iDentification
CLOMP - Clinically Okay Metagenomics Pipeline
CLOMP is an open source pipeline for taxonomical assignment of metagenomic next-generation sequencing data.
Instructions for downloading and installing CLOMP can be found at Github.
LAVA - Longitudinal Analysis of Viral Alleles
LAVA is a simple command-line tool that allows dynamic and interactive visualization of viral genome evolution from longitudinal or linked samples. LAVA addresses the specific challenges posed by longitudinal sampling for viral infections.
For more information about LAVA, please visit Github.