Yeatman Lab Wiki

**This is an old revision of the document!** ----

Warning: "continue" targeting switch is equivalent to "break". Did you mean to use "continue 2"? in /nfs/aesop1/hw00/d36/bdelab/wiki/inc/parser/handler.php on line 1458

Warning: preg_match(): Compilation failed: invalid range in character class at offset 3093 in /nfs/aesop1/hw00/d36/bdelab/wiki/inc/parser/lexer.php on line 118

In the server, the nomenclature for file naming is as follows. This will allow for ease in adapting to the naming structures within Freesurfer, but also will provide a stable system by which we can keep all of the longitudinal data organized and clear. ====MRI==== Within /mnt/diskArray/projects/MRI:\\ ***NLR_###_FL**—Parent ***YYYYMMDD**—Scan Date ****.PAR**—Header ****.REC**—Image file ****.nii**—Converted nifty images ****MSE.nii.gz**—Root mean squared image ====Anatomy==== Within /mnt/diskArray/projects/anatomy:\\ ***NLR_###_FL** ***t1_acpc.nii.gz**—AC-PC aligned, longitudinal average ***NLR_###_FL_MR#** ***t1_acpc.nii.gz**—AC-PC aligned, individual scan ====Freesurfer==== Within /mnt/diskArray/projects/freesurfer:\\ :'''NLR_###_FL_MR#''' —Individual Segmentation\\ :'''NLR_###_FL_MR#.long.NLR_###_FL_MRbase''' —Longitudinal base comp for ea scan\\ :'''NLR_###_FL_MRbase''' —Base average segmentation\\ :'''qdec''' —Longitudinal data storage\\ ::'''long.qdec.table.dat''' —data table\\