Cherry TJ, Yang MG, Harmin DA, Tao P, Timms AE, Bauwens M, Allikmets R, Jones EM, Chen R, De Baere E, Greenberg ME. Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in desease. Proc Natl Acad Sci U S A. 2020 Apr 21;117(16):9001-9012. doi: 10.1073/pnas.1922501117. Epub 2020 Apr 7.PMID: 32265282
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Majidi SP, Reddy NC, Moore MJ, Chen H, Yamada T, Andzelm MM, Cherry TJ, Hu LS, Greenberg ME, Bonni A. Chromatin Environment and Cellular Context Specify Compensatory Activity of Paralogous MEF2 Transcription Factors. Cell Rep. 2019 Nov 12;29(7):2001-2015.e5. doi: 10.1016/j.celrep.2019.10.033.PMID: 31722213
Van Schil K, Naessens S, Van de Sompele S, Carron M, Aslanidis A, Van Cauwenbergh C, Mayer AK, Van Heetvelde M, Bauwens M, Verdin H, Coppieters F, Greenberg ME, Yang MG, Karlstetter M, Langmann T, De Preter K, Kohl S, Cherry TJ, Leroy BP; CNV Study Group, De Baere E. Correction: Mapping the genomic landscape of inherited retinal disease genes prioritizes genes prone to coding and noncoding copy-number variations. Genet Med. 2019 Aug;21(8):1998. doi: 10.1038/s41436-018-0305-0.PMID: 30297699
Jamshidi F, Place EM, Mehrotra S, Navarro-Gomez D, Maher M, Branham KE, Valkanas E, Cherry TJ, Lek M, MacArthur D, Pierce EA, Bujakowska KM. Contribution of noncoding pathogenic variants to RPGRIP1-mediated inherited retinal degeneration. Genet Med. 2019 Mar;21(3):694-704. doi: 10.1038/s41436-018-0104-7. Epub 2018 Aug 3.PMID: 30072743
Van Schil, K., Naessens, S., Van de Sompele, S., Carron, M., Aslanidis, A., Van Cauwenbergh, C., Kathrin Mayer, A., Van Heetvelde, M., Bauwens, M., Verdin, H., Coppieters, F., Greenberg, M.E., Yang, M.G., Karlstetter, M., Langmann, T., De Preter, K., Kohl, S.,Cherry, T.J., Leroy, B.P., De Baere, E. Mapping the genomic landscape of inherited retinal disease genes prioritizes genes prone to coding and noncoding copy-number variations. Genet Med. 2017 Jul 27. PMID:28749477
Andzelm, M.M.*, Cherry, T.J.*, Harmin, D.A., Boeke, A.C., Lee, C., Hemberg, M., Pawlyk, B., Malik, A.N., Flavell, S.W., Sandberg, M.A., Raviola, E., Greenberg, M.E. (2015) MEF2D Drives Photoreceptor Development through a Genome-wide Competition for Tissue-Specific Enhancers. Neuron. 86, 1-17. * equal contribution.
Cherry, T.J., Wang, S., Bormuth, I., Schwab, M., Olson, J., Cepko, C.L. (2011) NeuroD factors regulate cell fate and neurite stratifcation in the developing retina. J. Neurosci. 31(20), 7365-7379.
Cherry, T.J., Trimarchi J.M., Stadler M.B., Cepko C.L. (2009) Development and diversification of retinal amacrine interneurons at single cell resolution. Proc Natl Acad Sci USA 106(23), 9495-9500.
Sun, T., Patoine, C., Abu-Khalil, A., Visvader, J., Sum, E., Cherry, T. J., Orkin, S. H., Geschwind, D. H., and Walsh, C. A. (2005). Early asymmetry of gene transcription in embryonic human left and right cerebral cortex. Science 308, 1794-1798.